Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 4e-15 seq3759 93.3 5e-14 seq492 93.3 5e-14 seq368 93.3 5e-14 seq202 93.3 5e-14 seq1197 91.5 2e-13 seq5256 87.8 2e-12 seq4883 87.8 2e-12 seq3932 87.8 2e-12 seq3627 87.8 2e-12 seq3369 87.8 2e-12 seq2737 87.8 2e-12 seq2131 87.8 2e-12 seq1958 87.8 2e-12 seq1091 87.8 2e-12 seq960 87.8 2e-12 seq66 87.8 2e-12 seq7053 84.2 3e-11 seq199 84.2 3e-11 seq743 82.4 9e-11 >seq30 Length=152714 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 9364 AAAAATTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 9423 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 9424 TCACCACTATACTACCGAGGA 9444 >seq3759 Length=9512 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 2314 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 2255 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 2254 TCACCACTATACTACCGAGGA 2234 >seq492 Length=45214 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 968 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 1027 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 1028 TCACCACTATACTACCGAGGA 1048 >seq368 Length=54675 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 29783 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 29842 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 29843 TCACCACTATACTACCGAGGA 29863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 28290 AAAAGGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 28231 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 28230 TCACCACTATACTACCGAGGA 28210 >seq202 Length=73597 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 39220 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 39279 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 39280 TCACCACTATACTACCGAGGA 39300 >seq1197 Length=26491 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | ||| | || | ||| | || |||||| || || ||||| || | Sbjct 24116 TCCTCCTCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 24175 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || |||||||| || ||||| ||||||| |||||||| | || Sbjct 24176 AAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGG 24235 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| |||||| |||| || | | ||||| | ||||| Sbjct 24236 GATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCAC 24295 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || | ||| || || ||||||||||| Sbjct 24296 CTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 >seq5256 Length=5818 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 4541 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 4482 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 4481 TCACCACTATACTACCGAGGA 4461 >seq4883 Length=6562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 1774 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 1833 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 1834 TCACCACTATACTACCGAGGA 1854 >seq3932 Length=9013 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 2086 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 2145 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 2146 TCACCACTATACTACCGAGGA 2166 >seq3627 Length=9964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 1055 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 996 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 995 TCACCACTATACTACCGAGGA 975 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 2984 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 2925 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 2924 TCACCACTATACTACCGAGGA 2904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 9952 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 9893 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 9892 TCACCACTATACTACCGAGGA 9872 >seq3369 Length=10739 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 1534 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 1475 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 1474 TCACCACTATACTACCGAGGA 1454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 4643 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 4584 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 4583 TCACCACTATACTACCGAGGA 4563 >seq2737 Length=13627 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 4929 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 4870 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 4869 TCACCACTATACTACCGAGGA 4849 >seq2131 Length=17229 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 4002 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 3943 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 3942 TCACCACTATACTACCGAGGA 3922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 4746 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 4805 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 4806 TCACCACTATACTACCGAGGA 4826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 15662 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 15603 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 15602 TCACCACTATACTACCGAGGA 15582 >seq1958 Length=18571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 4582 AAAAAGGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 4523 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 4522 TCACCACTATACTACCGAGGA 4502 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| |||||| |||||| |||||| | ||||||| || |||||||||| Sbjct 3253 TTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCA 3312 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 3313 CTATACTACCGAGGA 3327 >seq1091 Length=28235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 8 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 67 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 68 TCACCACTATACTACCGAGGA 88 >seq960 Length=30977 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 6499 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 6440 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 6439 TCACCACTATACTACCGAGGA 6419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 7702 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 7643 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 7642 TCACCACTATACTACCGAGGA 7622 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 8934 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 8875 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 8874 TCACCACTATACTACCGAGGA 8854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 12425 AAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 12366 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 12365 TCACCACTATACTACCGAGGA 12345 >seq66 Length=116624 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 86584 AAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 86525 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 86524 TCACCACTATACTACCGAGGA 86504 >seq7053 Length=3211 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | ||||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 1575 AAAAGATCTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 1634 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 1635 TCACCACTATACTACCGAGGA 1655 >seq199 Length=74002 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| || |||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 22442 AAAAGATTCCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 22383 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 22382 TCACCACTATACTACCGAGGA 22362 >seq743 Length=36011 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 60057 AAAAATT-TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGG-CGGAC-- 60112 ||||||| |||||| |||| |||||| |||||| |||||| | ||||||| | ||| Sbjct 31783 AAAAATTGTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGAACAGACGC 31842 Query 60113 --ATACTCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||||||| Sbjct 31843 GGATACTCACCACTATACTACCGAGGA 31869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571708518645080