Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1864 84.2 2e-11 >seq1864 Length=19213 Score = 84.2 bits (92), Expect = 2e-11 Identities = 186/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| || ||| | || || || |||||||| || ||||||||||| ||||| |||| | Sbjct 14367 AAGAAGGAGATCTCGGACCAGTTTATGGATTCCAGTGGAGACATTTCGGAGCGAAATACG 14308 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 | || ||||| | || |||||||||||| ||||| || | || ||| | Sbjct 14307 TGGATTGTCACACAGACTACACTGGACAAGGAGTCGATCAGTTGGCTGAGGTGATTCGTC 14248 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 ||| ||| | | || || ||||||||| || | | || ||||| | ||| Sbjct 14247 AAATCAAAGAGGAACCGGACAGCAGAAGAATCATCATGTCGGCGTGGAATCCATCGGATC 14188 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 | ||||| ||||| || ||||| | | | || || || ||||||| ||| | Sbjct 14187 TTGGGCAAATGGTCTTGCCGCCGTGTCACACGATGTGTCAGTTCTACGTTGAGAATGGAG 14128 Query 20453 AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGG 20491 | ||||| || || |||||||| || | ||||||| Sbjct 14127 AGTTGTCCTGCCAGTTGTATCAAAGAAGTGGAGATATGG 14089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399109754395645