Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1737 131 1e-25 seq1197 87.8 1e-12 >seq1737 Length=20200 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| || || | || || Sbjct 9800 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCA 9859 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||||||||| ||||| || || || || || || | || ||||||||| Sbjct 9860 AGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGG 9919 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | | || | |||| ||||| | |||||||||||| Sbjct 9920 ATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTA 9979 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||||||||| || |||||||||||| Sbjct 9980 CCCGTCAGAGTCTTGACGAAGATTTGCATG 10009 >seq1197 Length=26491 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || | | || || || || ||||||||||| Sbjct 24152 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAA 24211 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | | || ||||| || || | ||||||||||| ||||| ||| || Sbjct 24212 GATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTT 24271 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | |||||||||||| ||| ||||| || || |||| || || || Sbjct 24272 CTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGAC 24331 Query 45325 AAAGATTTGCATG-TTGC 45341 |||||||||||| |||| Sbjct 24332 GAAGATTTGCATGATTGC 24349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| || |||||||||||| || ||| |||| || || || ||||| ||||| Sbjct 21663 CTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAA 21722 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| || || || || | || |||||||| ||||| ||| || Sbjct 21723 GATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTT 21782 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | | || | || ||||| | ||| || ||||| || || |||||||| || Sbjct 21783 CTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGAC 21842 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 21843 GAAGATCTGCAT 21854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395001718605481