Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq126 271 7e-68 seq1197 107 2e-18 seq433 105 6e-18 seq11978 87.8 2e-12 seq11971 82.4 7e-11 seq2416 82.4 7e-11 seq1737 82.4 7e-11 >seq126 Length=90294 Score = 271 bits (300), Expect = 7e-68 Identities = 449/646 (70%), Gaps = 4/646 (1%) Strand=Plus/Plus Query 23335 GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCG 23394 ||| || || || || |||| |||||||| || ||||| ||||| |||||| || || Sbjct 11150 GTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAACAGATCACG 11209 Query 23395 GGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAA--AAGTCCAACACGTCC 23452 || ||| |||| ||| ||||||||||| | || ||| || || || || || Sbjct 11210 AGCACGCTCCTCTTCTGGTCCGGTGTTCTTG--CGAAGGGAAACGAACTCGAAAACATCG 11267 Query 23453 GCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCG 23512 || ||||| ||||||||||||| ||| || || || || | ||| ||||| || |||||| Sbjct 11268 GCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCTTGATCG 11327 Query 23513 ACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCG 23572 || |||||||| ||||||||||| || | |||||||| | ||| || ||||| | ||| Sbjct 11328 ACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGATGTTCCG 11387 Query 23573 CCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCT 23632 || || | |||| || | || || | || || |||| || || || || Sbjct 11388 TTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTGAGTCCGATTCCA 11447 Query 23633 CCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTG 23692 ||| | || || || | |||||||| ||||||||||||||||| || || Sbjct 11448 CCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGAGAATCGAA 11507 Query 23693 TCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAG 23752 ||||| | | | | |||||| || |||||||| || | | || | | | Sbjct 11508 TCCTCGCTCATTGTCAACAAGAAGCAGGAAGACATCTGTGGACGGCAGGTTCCAGAGTTG 11567 Query 23753 AACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATG 23812 || || || || || || || | ||| | | ||||| ||||||||||| |||||| Sbjct 11568 AAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTACGTCTCGATG 11627 Query 23813 GCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGT 23872 ||||| | ||||| | |||||| || ||||||||||||||||||| ||| | ||| || Sbjct 11628 GCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATCTGTTGTGGC 11687 Query 23873 CTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCA 23932 | || || | | |||||| |||| || || || |||| || || || |||||| Sbjct 11688 CGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTCTTGAATCCA 11747 Query 23933 AAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCA 23978 || ||| ||| | |||||||||| | ||| ||||| || |||| Sbjct 11748 AAGTAGCTGTAGGAATAGTCACGATCATACACGATGGCGGAGTTCA 11793 Score = 143 bits (158), Expect = 2e-29 Identities = 321/478 (67%), Gaps = 8/478 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 |||||| || || || || | ||| || |||| || ||||| || | ||| ||||| || Sbjct 9660 CTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTCC 9719 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| || ||| ||||||| |||| || || ||||| || | | | || || || Sbjct 9720 AGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTGG 9779 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | |||||| | |||| ||| ||| ||||| || | ||||| ||||||||||| Sbjct 9780 CTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGGC 9839 Query 22285 CATATTTATCAATGTAC-GCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | || || | | | || |||||||| ||||| || ||| | |||| | Sbjct 9840 CATCTCGAT-GATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGT 9898 Query 22344 CTAACGGTATCGATTCG---ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTT 22400 | || || | || || | || | ||| ||||| ||| |||| ||| | Sbjct 9899 CATCTGGGAT---TCCGGGAATGTTTTGAATGGATCCGTTGTTGGCGATGAGTCGATTCT 9955 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | ||| ||| ||||||| || | | |||||| |||| || || | || || | Sbjct 9956 TCATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAA 10015 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 || || || ||||| | || || ||| ||||||||| || ||| | || || | | Sbjct 10016 TCTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCG 10075 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAG 22578 |||| |||||||| || || || ||||| ||||| || ||||| || |||| ||| || Sbjct 10076 ATTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAG 10133 >seq1197 Length=26491 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || || || || |||||| |||| |||||| | || Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | ||| ||||||||||| | || || || ||| Sbjct 21794 GATACCATCGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAG 21735 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || |||||||| || ||| | || ||| || || ||| || ||| Sbjct 21734 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAAC 21675 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| |||||||| || || Sbjct 21674 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCT 21643 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| |||| || ||| | ||| Sbjct 23610 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCC 23551 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||||| | || || || ||| Sbjct 23550 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 23491 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || ||||| || || ||| | || || | | | || || ||||| || Sbjct 23490 CAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGA-TGGACGCACCTTGTCTGATTACAA 23432 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || |||||||| ||||| || ||| | || || || |||| Sbjct 23431 CATCCAGAAGGAGTCGACTCTCCATCTCGTTCTTCGCCTCAGAGGAGGTA 23382 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| ||||||||| ||||| || || |||| || |||||||||||| | || || || Sbjct 24348 CAATCATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGG 24289 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | ||||| | ||| |||||||| || | || || | Sbjct 24288 CTTCTGACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAG 24229 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| | || || ||||| || || ||| | || || | ||| | || | Sbjct 24228 ACCAGCAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACT 24169 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || |||||||| ||||| || || Sbjct 24168 ACAACATCCAGAAGGAGTCGACTCTCCATCTCGTTCT 24132 >seq433 Length=49269 Score = 105 bits (116), Expect = 6e-18 Identities = 224/331 (68%), Gaps = 20/331 (6%) Strand=Plus/Minus Query 57771 GAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 ||||| | | ||| ||||| || ||| | ||||| || ||| | ||||| || ||||| Sbjct 30440 GAGGCTCGCTTCTTCTACGGTTTCCAAATCGCCATCGAGAACATCCATTCGGAGATGTAC 30381 Query 57831 TCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCG 57890 || |||||||| || ||| | || | | ||| | | |||||||||||| Sbjct 30380 TCAAAGCTCATCGAGACATACATCCGCGATGAGAAGGAGCGTCACACACTGTTCAACGCC 30321 Query 57891 ATC-----GAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA- 57944 ||| | ||| | ||| |||||||| || ||| | | |||||||| Sbjct 30320 ATCTTCGAGTTCGAATTC-----ATCAAGAAGAAGGCCGACTGGGCTCTTAAATGGATTT 30266 Query 57945 ---AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGT 58001 | ||| | ||| ||||||||||||| || || || |||||||||||||| || Sbjct 30265 CGGATAAG----AAGGCGTCGTTCGCCGAGAGACTGATTGCTTTCGCCGCCGTCGAGGGC 30210 Query 58002 ATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060 || ||| || | | | |||| || | || |||||| ||||||| ||||| ||||||| Sbjct 30209 ATCTTC-TTCAGTGGATCTTTCGCCTCCATCTTTTGGTTGAAGAAGCGCGGATTGATGCC 30151 Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||||| | ||| |||||||| ||| Sbjct 30150 AGGATTGACGCATTCCAATGAGTTGATCTCG 30120 Score = 91.5 bits (100), Expect = 1e-13 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | | || || ||||| | || ||||||||||| |||||||| || || Sbjct 30752 GAGATTTGGCAGTTTTATAAGAAGGCTGTCGCCTCGTTTTGGACTGTCGAAGAGGTGGAT 30693 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAG-AGAAATTTTATTAA 57685 || |||||| ||| ||||||||| | || | | |||| || | ||| | | Sbjct 30692 TTGGGAAAGGATATGAACGATTGGGAGAAGATGAACGGAGATGAGCAGTACTTTATCTCA 30633 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 | | ||| | ||||||||||| || |||||||| |||||||| || || ||||| Sbjct 30632 AGA-GTGCTCGCGTTTTTCGCTGCTTCCGATGGAATTGTTAATGAAAACTTGGT 30580 >seq11978 Length=497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/238 (69%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 58161 GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAA 58220 || ||||||| || |||||| || || ||||| || ||| | ||||| ||||||| Sbjct 490 GAGCGCATCTACGAGATTATCCGTGATGCTGTCGCCATTGAACAAGAGTTCCTCACCGAG 431 Query 58221 GCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTT 58280 || || || || | ||| |||| || ||| | ||||||| |||||||||||||| Sbjct 430 GCTCTTCCAGTAGACATAATCGGAATAAACTGTCGCATGATGTCCCAGTACATTGAGTTT 371 Query 58281 GTTGCCGACAGACTTTTGCTCGAACTGA-TTGGAGAGCGTCA----TTACAACACGAAAA 58335 || ||||| | |||||||| | || |||| ||| | ||||| ||| | Sbjct 370 GTCGCCGA---TCATTTGCTCG--CCGAGTTGGGATGCGAGAAGTTGTACAAAGTGAAGA 316 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 | || || || || ||| | ||||| |||| || ||||| ||||| ||||| || Sbjct 315 ACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAAAGACCAACTTCTTCGAGAA 258 >seq11971 Length=499 Score = 82.4 bits (90), Expect = 7e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 58161 GATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAA 58220 || ||||||| || || ||| || || ||||| || ||| | ||||| ||||||| Sbjct 8 GAGCGCATCTACGAGATCATCCGTGATGCTGTCGCCATTGAACAAGAGTTCCTCACCGAG 67 Query 58221 GCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTT 58280 || || || || | |||| |||| |||||| | ||||||| |||||||||||||| Sbjct 68 GCTCTTCCAGTAGACATGATCGGAATGAACTGTCGCCTGATGTCCCAGTACATTGAGTTT 127 Query 58281 GTTGCCGA 58288 || ||||| Sbjct 128 GTCGCCGA 135 >seq2416 Length=15437 Score = 82.4 bits (90), Expect = 7e-11 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||| | | || || ||||| | || ||||||||||| |||||||| || || Sbjct 2954 GAGATTTGGCAGTTTTATAAGAAGGCTGTCGCCTCGTTTTGGACTGTCGAAGAGGTGGAT 2895 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAG-AGAAATTTTATTAA 57685 || |||||| | | ||||||||| | || | | |||| || | || || Sbjct 2894 TTGGGAAAGGATATTAACGATTGGGAGAAGATGAACGGAGATGAGCAGTACTTCATTTCG 2835 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 | | ||| | |||||||| || || |||||||| |||||||| ||||| ||||| Sbjct 2834 AGA-GTGCTCGCGTTTTTTGCTGCTTCCGATGGAATTGTTAATGAGAACTTGGT 2782 >seq1737 Length=20200 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||||||||| || || ||||| ||| |||| || || | || Sbjct 10009 CATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACGATTACCCTCGAGGTCGAGGCTTC 9950 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || |||||||||||| | || || || || Sbjct 9949 CGATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCA 9890 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||| || | || ||||| || || || | || || | | | ||| | ||| || | Sbjct 9889 GCAACGCTTGATCTTCGCCGGAAAGCAACTTGAGGA-TGGACGTACTCTCTCCGACTACA 9831 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || || || || ||||| |||| || Sbjct 9830 ACATCCAGAAGGAGTCCACCCTTCACTTGGTTCT 9797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445681364487120