Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq433 95.1 2e-14 >seq433 Length=49269 Score = 95.1 bits (104), Expect = 2e-14 Identities = 168/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 102127 TGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGG 102186 ||| |||||| ||||| ||||| || || || | | || || || | | | || Sbjct 29980 TGATGCCGTCGCCATTGAGCAAGAGTTCCTTACCGAGGCTCTTCCAGTCGACATGATCGG 29921 Query 102187 AATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGA 102246 ||||||||| ||||| |||||||||||| ||||| || ||| | || | | || Sbjct 29920 AATGAACTGTCGCCTGATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTTGCCGA 29861 Query 102247 AATGGGACTAGAAAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTC 102306 ||||| || ||| || || || | ||||||||| |||||||| || || || Sbjct 29860 GTTGGGATGCGAGAAGTTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTC 29801 Query 102307 CCTCGAGAATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGT 102366 |||| ||||||||||| || || ||| | ||| ||||||| |||||| | || Sbjct 29800 TATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCAACGTCCGGGTGT 29741 Query 102367 CATGG 102371 ||||| Sbjct 29740 CATGG 29736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989390505094255