Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq126 194 2e-44 seq2416 86.0 8e-12 seq433 86.0 8e-12 seq11978 84.2 3e-11 >seq126 Length=90294 Score = 194 bits (214), Expect = 2e-44 Identities = 477/719 (66%), Gaps = 6/719 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 |||||||| |||||||| | || | || || || || || |||||||||||| Sbjct 11082 TCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 11141 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63308 || || ||| | || || || ||||| || ||||| |||||||| ||||| | || Sbjct 11142 CAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAAC 11201 Query 63309 AGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63368 ||||| | | | | || || ||| || ||||| ||| | |||| | | | Sbjct 11202 AGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAA 11261 Query 63369 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63428 | ||| | ||||| || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 11262 ACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCT 11321 Query 63429 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63488 ||||| | || | |||||||| || ||||| | | ||| || || | || || ||| Sbjct 11322 TGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGAT 11381 Query 63489 ATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGAC 63546 | || ||||| || | ||| |||| ||||||| || ||| | |||| | | Sbjct 11382 GTTCCGTTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTGA--GTC 11439 Query 63547 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTT 63606 | ||||| || || | |||||||| | |||||| | || | ||||| ||||| || Sbjct 11440 CGATTCCACCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGA 11499 Query 63607 CTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTT 63665 || ||| ||| |||| || || |||| ||| |||||| || |||| ||| Sbjct 11500 GAATCGAATCCTCGCTCATTGTCAACAAGAAG-CAGGAAGACATCTGTGGACGGCAGGTT 11558 Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || | || || | ||||| ||||| || || | | ||||| | ||||||||| Sbjct 11559 CCAGAGTTGAAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTAC 11618 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 ||||| || || | | || || | || ||||| | ||||| ||||| | ||| Sbjct 11619 GTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATC 11678 Query 63786 TGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63845 || || || | |||||| |||| ||||| || || | | ||| || ||||| || Sbjct 11679 TGTTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTC 11738 Query 63846 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 || || ||||| ||| |||| ||| |||| || || || | || | || || ||||| Sbjct 11739 TTGAATCCAAAGTAGCTGTAGGAATAGTCACGATCATACACGATGGCGGAGTTCAGCTT 11797 Score = 136 bits (150), Expect = 5e-27 Identities = 327/494 (66%), Gaps = 7/494 (1%) Strand=Plus/Plus Query 62035 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 ||||||| | |||||||||| || | | || || || ||||| | ||||||||||| Sbjct 9659 CCTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTC 9718 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | || || || || |||||||||| || ||||| || | | || || | Sbjct 9719 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTG 9778 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | | || || || || || | |||||| |||||| ||| | ||||| | || || | Sbjct 9779 GCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGG 9838 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| | |||||| ||| || | |||||||| | || ||| | | ||| || | Sbjct 9839 CCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGT 9898 Query 62275 CTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTACCATAATCCTATTCTT 62329 | ||||| | || || || ||||||||||| | | || | | |||||| Sbjct 9899 CATCTGGGATTCCGGGAATG--TTTTGAATGGATCCGTTGTTGGCGATGAGTCGATTCTT 9956 Query 62330 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTAC 62389 ||||||||| |||| ||| |||||| ||| | | || | || || ||||| | Sbjct 9957 CATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAAT 10016 Query 62390 TTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62449 ||||| ||||| || | || | || | |||||| || ||| || || || | ||| Sbjct 10017 CTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGA 10076 Query 62450 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62509 || || ||||| | ||||| || || || ||||| ||||| || |||| || | ||| Sbjct 10077 TTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 10136 Query 62510 ATTTCTAAGACCGT 62523 || | || |||| Sbjct 10137 GTTGCGAACTCCGT 10150 >seq2416 Length=15437 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/169 (72%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 || ||| ||| | ||| ||||| | || ||||| || | |||||| ||||| ||||| Sbjct 2326 TTGGAATGCGTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAAC 2385 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 ||||| |||||||| || || || || ||||| ||||| |||||||| | | || Sbjct 2386 GATCCACTGAAGAAGATGCCCTCAACGGCGGCAAAAGCAATCAGTCTCTCGGCGAA--CG 2443 Query 33747 GCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790 ||| || | | ||||| || ||||||| ||||||||||| || Sbjct 2444 ACGCCTTCTTATCCGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTT 2492 >seq433 Length=49269 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 |||||| || || || || ||||| || || || ||||| || | || || || || Sbjct 29752 TTGGTACTCGGAGACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTC 29811 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAA 33412 |||||| || || || || | || ||||| | || | ||||||| || | || || Sbjct 29812 CATGAAGTCGAAGGGGTTCTTCACTTTGTACAACTTCTCGCATCCCAACTCGGCAAGCAG 29871 Query 33413 TCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 33472 ||| ||||| || || || || ||||| ||| |||||||| || | | Sbjct 29872 ATGATCGGCGACAAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGATCATGTC 29931 Query 33473 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33519 |||||||||||| | ||||| || ||||| ||||||| || |||| Sbjct 29932 GACTGGAAGAGCCTCGGTAAGGAACTCTTGCTCAATGGCGACGGCAT 29978 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/178 (71%), Gaps = 7/178 (4%) Strand=Plus/Plus Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 || || || || ||| ||| | ||| ||||| | || ||||| || | |||||| ||| Sbjct 30124 ATCAACTCATTGGAATGCGTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATG 30183 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 || ||||| ||||| |||||||| || || || || || || ||||| |||||||| Sbjct 30184 GAGGCGAAAGATCCACTGAAGAAGATGCCCTCGACGGCGGCGAAAGCAATCAGTCTCTCG 30243 Query 33738 CCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790 | | || ||| || | | ||||| || ||||||| ||||||||||| || Sbjct 30244 GCGAA--CGACGCCTTCTTATCCGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTT 30299 >seq11978 Length=497 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 33309 CGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGA 33368 || || ||||| || || || ||||| || | || || || |||||||| || || || Sbjct 255 CGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAAGGGG 314 Query 33369 TTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAAT 33428 || | || ||||| | || | ||||||| || | | ||| ||| ||||| || Sbjct 315 TTCTTCACTTTGTACAACTTCTCGCATCCCAACTCGGCGAGCAAATGATCGGCGACAAAC 374 Query 33429 TCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACA 33488 || || || |||||| ||| || ||||| || | | |||||||||||| | Sbjct 375 TCAATGTACTGGGACATCATGCGACAGTTTATTCCGATTATGTCTACTGGAAGAGCCTCG 434 Query 33489 GTAAGAAATTCTTGTTCAATGGATACCGCAT 33519 || || || ||||||||||||| || |||| Sbjct 435 GTGAGGAACTCTTGTTCAATGGCGACAGCAT 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629697454420080