Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq126 194 2e-44 >seq126 Length=90294 Score = 194 bits (214), Expect = 2e-44 Identities = 477/719 (66%), Gaps = 6/719 (1%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 |||||||| |||||||| | || | ||| || || || || |||||||||||| Sbjct 11082 TCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 11141 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || ||| | || || || ||||| || ||||| |||||||| ||||| | || Sbjct 11142 CAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAAC 11201 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||| | | | | || || ||| || ||||| ||| | |||| | | | Sbjct 11202 AGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAA 11261 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 | ||| ||||| || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 11262 ACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCT 11321 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 ||||| | || | |||||||| || ||||| | | ||| || || | ||||||||| Sbjct 11322 TGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGAT 11381 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTA--CTAATTGATAGAC 66339 || || ||||| || | ||| |||| | ||||| || ||| | ||| || | Sbjct 11382 GTTCCGTTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTG--AGTC 11439 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | ||||| || || | |||||||| | |||||| | || | || || ||||| || Sbjct 11440 CGATTCCACCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGA 11499 Query 66400 CTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 66458 || ||| || ||| ||| || || || ||| |||||| || |||| | ||| Sbjct 11500 GAATCGAATCCTCGCTCATTGTCAACAAG-AAGCAGGAAGACATCTGTGGACGGCAGGTT 11558 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 || | || || | ||||| ||||| || || | | ||||| | ||||||||| Sbjct 11559 CCAGAGTTGAAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTAC 11618 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 ||||| || || | | || || | || ||||| | ||||| ||||| | ||| Sbjct 11619 GTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATC 11678 Query 66579 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 66638 || || || | ||||||||| | ||||| || || | | ||| || ||||| || Sbjct 11679 TGTTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTC 11738 Query 66639 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 || || ||||| ||| |||| ||| |||| || || || | || | ||||| || || Sbjct 11739 TTGAATCCAAAGTAGCTGTAGGAATAGTCACGATCATACACGATGGCGGAGTTCAGCTT 11797 Score = 136 bits (150), Expect = 5e-27 Identities = 327/494 (66%), Gaps = 7/494 (1%) Strand=Plus/Plus Query 64828 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 ||||||| | |||||||||| || | | || || || ||||| | ||||||||||| Sbjct 9659 CCTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTC 9718 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || || || |||||||||| || ||||| || | | || || | Sbjct 9719 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTG 9778 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | | || || || || || | |||||| |||||| ||| | ||||| | || || | Sbjct 9779 GCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGG 9838 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 65067 |||| | |||||| ||| || | |||||||| | || ||| | | ||| || | Sbjct 9839 CCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGT 9898 Query 65068 CTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 65122 | ||||| | || ||| || |||||||||| | || || | | |||||| Sbjct 9899 CATCTGGGATTCCGGGAATGTTTT--GAATGGATCCGTTGTTGGCGATGAGTCGATTCTT 9956 Query 65123 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 65182 ||||||||| |||| ||| |||||| ||| | | || | || |||||||| | Sbjct 9957 CATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAAT 10016 Query 65183 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 65242 || || ||||| || | || | || | |||||| || ||| || || || | || Sbjct 10017 CTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGA 10076 Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302 || || ||||| | ||||| || || || ||||| ||||| || |||| || | ||| Sbjct 10077 TTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 10136 Query 65303 ATTTCTAAGACCGT 65316 || | || |||| Sbjct 10137 GTTGCGAACTCCGT 10150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658047245311240