Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1737 84.2 2e-11 seq1197 82.4 8e-11 >seq1737 Length=20200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| ||||||| || ||||| || || ||||| || ||| Sbjct 9782 CCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 9841 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || || || || || || |||||| ||||||||||| || || Sbjct 9842 AGAGTACGTCCA-TCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGG 9900 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | || |||| | ||| || Sbjct 9901 AATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGAC 9960 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||| || |||| || || ||||| |||||||| Sbjct 9961 CTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCAT 10008 >seq1197 Length=26491 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| || || || |||| || | |||||| || || || || || || ||| Sbjct 24189 TCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTG 24248 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || |||||| || | | || | ||||| | | ||||||||| | ||| | | Sbjct 24249 TCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATC 24308 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || ||||||||||| ||||| |||||||| Sbjct 24309 GTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495969369591200