Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq126 221 2e-52 seq433 87.8 3e-12 seq11978 86.0 9e-12 seq2416 86.0 9e-12 >seq126 Length=90294 Score = 221 bits (244), Expect = 2e-52 Identities = 483/719 (67%), Gaps = 6/719 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 |||||||| |||||||| || || | ||| || || ||| || |||||||||||| Sbjct 11082 TCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 11141 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 79980 || || || | || || || ||||| || ||||| |||||||| ||||| | || Sbjct 11142 CAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAAC 11201 Query 79981 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 80040 ||||| | | | | ||| || ||| || ||||| ||| | |||| | | | Sbjct 11202 AGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAA 11261 Query 80041 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCC 80100 | ||| | ||||| || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 11262 ACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCT 11321 Query 80101 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 80160 ||||| | || | |||||||| || ||||| | | ||| || || | ||||||||| Sbjct 11322 TGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGAT 11381 Query 80161 GTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATAGAC 80218 || || ||||| || | ||| |||| ||||||| || ||| | ||| || | Sbjct 11382 GTTCCGTTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTG--AGTC 11439 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || || | |||||||| | |||||| | || | || || ||||| || Sbjct 11440 CGATTCCACCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGA 11499 Query 80279 CTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||| || ||| ||| || || || ||| |||||| || |||| | ||| Sbjct 11500 GAATCGAATCCTCGCTCATTGTCAACAAG-AAGCAGGAAGACATCTGTGGACGGCAGGTT 11558 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || | || || | ||||| ||||| || || | | ||||||| ||||||||| Sbjct 11559 CCAGAGTTGAAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTAC 11618 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||| || || | | || || | || ||||| | ||||| ||||| | ||| Sbjct 11619 GTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATC 11678 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 || || || | ||||||||| | || || || || | | |||||| ||||| || Sbjct 11679 TGTTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTC 11738 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 80576 || || ||||| ||| |||| ||| |||| || || || | || | ||||| || || Sbjct 11739 TTGAATCCAAAGTAGCTGTAGGAATAGTCACGATCATACACGATGGCGGAGTTCAGCTT 11797 Score = 149 bits (164), Expect = 9e-31 Identities = 330/494 (67%), Gaps = 7/494 (1%) Strand=Plus/Plus Query 78707 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 ||||||| | |||||||||| || | | || || || ||||| | ||||||||||| Sbjct 9659 CCTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTC 9718 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || || || ||||||||||||| ||||| || | | || || | Sbjct 9719 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTG 9778 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | | || || || || || | |||||| |||||| ||| | ||||| | || || | Sbjct 9779 GCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGG 9838 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946 |||| | |||||| ||| || | |||||||| | || ||| | | ||| || | Sbjct 9839 CCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGT 9898 Query 78947 CTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 79001 | ||||| | || ||| || |||||||||| | || || | | |||||| Sbjct 9899 CATCTGGGATTCCGGGAATGTTTT--GAATGGATCCGTTGTTGGCGATGAGTCGATTCTT 9956 Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061 ||||| ||| |||| ||| |||||| ||| | | || | || |||||||| | Sbjct 9957 CATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAAT 10016 Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 || || ||||| || | || | || | |||||| || ||| ||||| || | ||| Sbjct 10017 CTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGA 10076 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 ||| || ||||| | ||||| || || || || |||||||| || |||| || | ||| Sbjct 10077 TTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 10136 Query 79182 ATTTCTAAGACCGT 79195 || | || |||| Sbjct 10137 GTTGCGAACTCCGT 10150 >seq433 Length=49269 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 |||||| || || || || ||||| || || || ||||| || | || || || || Sbjct 29752 TTGGTACTCGGAGACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTC 29811 Query 49731 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 49790 |||||| || || || || | || || || | || | ||||||| || | || || Sbjct 29812 CATGAAGTCGAAGGGGTTCTTCACTTTGTACAACTTCTCGCATCCCAACTCGGCAAGCAG 29871 Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 ||| |||||||| || || || ||||| ||| |||||||| || | | Sbjct 29872 ATGATCGGCGACAAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGATCATGTC 29931 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 49898 |||||||||||| | ||||| || ||||| ||||||| || ||||| Sbjct 29932 GACTGGAAGAGCCTCGGTAAGGAACTCTTGCTCAATGGCGACGGCATC 29979 >seq11978 Length=497 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 49687 CGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGA 49746 || || ||||| || || || ||||| || | || || || |||||||| || || || Sbjct 255 CGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAAGGGG 314 Query 49747 TTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAAT 49806 || | || || || | || | ||||||| || | | ||| ||| |||||||| Sbjct 315 TTCTTCACTTTGTACAACTTCTCGCATCCCAACTCGGCGAGCAAATGATCGGCGACAAAC 374 Query 49807 TCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCA 49866 || || || |||||| ||| || ||||| || | | |||||||||||| | Sbjct 375 TCAATGTACTGGGACATCATGCGACAGTTTATTCCGATTATGTCTACTGGAAGAGCCTCG 434 Query 49867 GTAAGAAATTCTTGTTCAATGGATACCGCATC 49898 || || || ||||||||||||| || ||||| Sbjct 435 GTGAGGAACTCTTGTTCAATGGCGACAGCATC 466 >seq2416 Length=15437 Score = 86.0 bits (94), Expect = 9e-12 Identities = 122/169 (72%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 50005 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 50064 |||||| ||| | ||| ||||| | || ||||| || | |||||| ||||| || || Sbjct 2326 TTGGAATGCGTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAAC 2385 Query 50065 GACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTG 50124 || ||| |||||||| || || || |||||||| |||| |||||||| | ||| | Sbjct 2386 GATCCACTGAAGAAGATGCCCTCAACGGCGGCAAAAGCAATCAGTCTCTCGGCG-AAC-G 2443 Query 50125 GCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 50168 ||| || | | ||||| || ||||||| ||||||||||| || Sbjct 2444 ACGCCTTCTTATCCGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTT 2492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718131781248040