Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2416 98.7 1e-15 seq433 89.7 5e-13 >seq2416 Length=15437 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || ||||||||||||||||| || || || |||||||| || | ||||| ||||| Sbjct 2335 GTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAACGATCCACTG 2394 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| || |||||||| || ||||| || || |||| || | ||||| || || || Sbjct 2395 AAGAAGATGCCCTCAACGGCGGCAAAAGCAATCAGTCTCTCGGCGAACGACGCCTTCTTA 2454 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 | || |||||||| |||||| || | || || || || || || Sbjct 2455 TCCGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTTGATGAACTC 2501 >seq433 Length=49269 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 || ||||||||||||||||| || || || |||||||| || | ||||| ||||| Sbjct 30142 GTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAAAGATCCACTG 30201 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| || ||||| || || || || || || |||| || | ||||| || || || Sbjct 30202 AAGAAGATGCCCTCGACGGCGGCGAAAGCAATCAGTCTCTCGGCGAACGACGCCTTCTTA 30261 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 | || |||||||| |||||| || | || || || || || || Sbjct 30262 TCCGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTTGATGAATTC 30308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478497503204040