Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1197 95.1 9e-15 >seq1197 Length=26491 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| |||| |||| ||||| || | |||||| ||||| Sbjct 22653 CCTCCACGAAGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 22712 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || | || || ||||| || || | || ||||| || | || Sbjct 22713 AGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGA 22772 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| || | ||||| | | | ||||| ||||||||| Sbjct 22773 ATTCCTTCCTTGTC-CTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGAC 22831 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| ||||| || ||||||||||| ||||| |||||| Sbjct 22832 TTCCAAAGTGATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTGCATT 22880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381298667757138