Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq126 196 6e-45 >seq126 Length=90294 Score = 196 bits (216), Expect = 6e-45 Identities = 467/699 (67%), Gaps = 8/699 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||||| |||||||| ||| | || | ||| || || || || |||||||| || Sbjct 11082 TCGAACTCCTCTCCCCA-GCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGA 11140 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| || || | | || || ||||| || ||||| |||||||| ||||| | || Sbjct 11141 CCAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAA 11200 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||||| | | | | ||| || ||| || ||||| ||| | |||| | | Sbjct 11201 CAGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAA 11260 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 || ||| | ||||| || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 11261 AACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCC 11320 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||| | || | |||||||| || ||||| | | ||| || || | |||||||| Sbjct 11321 TTGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGA 11380 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT--GCTAATTGATAGA 72300 || || ||||| || | ||| |||| ||||||| || || || |||| | Sbjct 11381 TGTTCCGTTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTGA--GT 11438 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || ||||| || || | |||||||| | |||||| | || | || || ||||| || Sbjct 11439 CCGATTCCACCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCG 11498 Query 72361 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || ||| || |||| || || |||| ||| |||||| || |||| | || Sbjct 11499 AGAATCGAATCCTCGCTCATTGTCAACAAGAAG-CAGGAAGACATCTGTGGACGGCAGGT 11557 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 ||| | || || | ||||| ||||| || || | | ||||||| |||||||| Sbjct 11558 TCCAGAGTTGAAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTA 11617 Query 72480 CGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACAT 72539 |||||| || || | | || || | || ||||| | ||||| ||||| | ||| Sbjct 11618 CGTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCAT 11677 Query 72540 ATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGT 72599 || || || | ||||||||| | || || || || | | ||| || ||||| || Sbjct 11678 CTGTTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGT 11737 Query 72600 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 || || ||||| ||| |||| ||| |||| || || || Sbjct 11738 CTTGAATCCAAAGTAGCTGTAGGAATAGTCACGATCATA 11776 Score = 129 bits (142), Expect = 8e-25 Identities = 319/483 (66%), Gaps = 7/483 (1%) Strand=Plus/Plus Query 70790 CCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 ||||||| | || || |||| || | | || | || ||||| | ||||||||| | Sbjct 9659 CCTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTC 9718 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | || || || || |||||||||| || ||||| || | | ||||| | Sbjct 9719 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTG 9778 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 | | || |||||||| || | ||| ||| |||||| ||| | ||||| | || || | Sbjct 9779 GCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGG 9838 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 71029 |||| | |||||| ||| || | |||||||| | || ||| | | ||| || | Sbjct 9839 CCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGT 9898 Query 71030 CTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 | ||||| | || ||| || |||||||||| | || || | | ||| || Sbjct 9899 CATCTGGGATTCCGGGAATGTTTT--GAATGGATCCGTTGTTGGCGATGAGTCGATTCTT 9956 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 ||||| ||| |||| ||| |||||| ||| | | || | || |||||||| | Sbjct 9957 CATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAAT 10016 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 || || ||||| || | || | ||| | |||||| || ||| || || || | || Sbjct 10017 CTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGA 10076 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 || || ||||| | ||||| || || || ||||| ||||| || |||| || ||||| Sbjct 10077 TTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 10136 Query 71265 ATT 71267 || Sbjct 10137 GTT 10139 Score = 95.1 bits (104), Expect = 2e-14 Identities = 281/431 (65%), Gaps = 3/431 (1%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 |||||| |||| || |||||||| ||| |||| || | || ||||| ||||| || Sbjct 10292 GATCCTTCATAGGTCGAATATGGTCCATCTCTTTCAGCCAACTCGCAACTAGCCTCCAAA 10351 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || | || || || || ||||| || |||| || | |||| |||| |||| Sbjct 10352 GCAGCGTAGTAGATTGTCTCGAAGATTCTCTTGTTCAAATCTCTGGCTTGCGGGGAGGTG 10411 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 ||||||||| | || || || || || | |||||| || |||| ||| || || Sbjct 10412 AATGGATAACGCATCAGCATGAAGCAATCAGCGAGTCCTTGCACACCAAGACCAATTGGA 10471 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 | || | | | ||||| | ||| || || ||||| || || | ||| || || Sbjct 10472 CGATGACGCATGTTAGAGTTGCGAGCCTCCTCAACTGGATAGTAGTTGACATCGATGATC 10531 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673 || || | ||| | ||| || || ||| || || |||| |||||||| || Sbjct 10532 TTGTTCAAATTCTTCGTTATGACCTTTGTCACCTCAGCGAGCTTGACGAAATCAAACTTC 10591 Query 71674 CCATC--TATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 || || | || | |||||| || | || || ||||| ||||| || | |||| Sbjct 10592 TTCTCGTTAGTGACGTAACGGTTCAAAGCGATGGAGGCGAGATTGCAAACAGCGATCTCA 10651 Query 71731 TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | | | | | || | || ||||| |||||||| || |||||||||||||| | Sbjct 10652 TCTGGAGCAGAGTACTCGATGATTTCCGTGCAAAGGTTGGAGCACTTGATGGTTCCGAGG 10711 Query 71791 TTTTGTTGATT 71801 || || ||||| Sbjct 10712 TTCTGCTGATT 10722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671011171808360