Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq433 127 3e-24 seq2416 118 2e-21 seq126 114 2e-20 seq11978 96.9 5e-15 seq51 89.7 8e-13 >seq433 Length=49269 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705 |||||||| || || |||||||| || ||||| | || || ||| |||||| || Sbjct 29979 GATGCCGTCGCCATTGAGCAAGAGTTCCTTACCGAGGCTCTTCCAGTCGACATGATCGGA 29920 Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 |||||||| || |||| | ||||||| |||||||| || |||| ||| || |||| Sbjct 29919 ATGAACTGTCGCCTGATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTTGCCGAG 29860 Query 125766 TTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 ||| || ||| | ||||| | ||||| ||||| || |||||| | ||| || Sbjct 29859 TTGGGATGCGAGAAGTTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTCT 29800 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTACAAACG 125875 | || || ||||||||||| ||||||||| ||| ||||||| |||| Sbjct 29799 ATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCAACG 29750 Score = 125 bits (138), Expect = 1e-23 Identities = 225/325 (69%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||||||| || |||||| | || ||||| |||||||| | || || Sbjct 30429 CTTCTACGGTTTCCAAATCGCCATCGAGAACATCCATTCGGAGATGTACTCAAAGCTCAT 30370 Query 125294 TGACATGTACATTCGCGATCCGCAA---CGTAAACACATGCTCTTTAACGCAATCGACAC 125350 || | ||||| |||||| | | ||| | |||| || || ||||| ||| | Sbjct 30369 CGAGACATACATCCGCGATGAGAAGGAGCGTCA-CACA--CTGTTCAACGCCATCTTCGA 30313 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTC 125410 | | | || || ||||| | |||| || ||||| || | ||| | Sbjct 30312 GTTCGAATTCATCAAGAAGAAGGCCGACTGGGCTCTTAAATGGATTTCGGATAAGAAGGC 30253 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG 125470 |||| |||||| |||||| | || ||||||||||| |||||||||||||| || Sbjct 30252 GTCGTTCGCCGAGAGACTGATTGCTTTCGCCGCCGTCGAGGGCATCTTCTTCAGTGGATC 30193 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||| || ||||||||||| | |||||||||||| | ||||| ||| ||||||| || Sbjct 30192 TTTCGCCTCCATCTTTTGGTTGAAGAAGCGCGGATTGATGCCAGGATTGACGCATTCCAA 30133 Query 125531 CGAGTTTATATCTCGAGACGAGGGC 125555 ||||| |||||||| ||| || Sbjct 30132 TGAGTT--GATCTCGAGGTGAGCGC 30110 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/106 (78%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 124999 TTCCCA-TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||| |||| ||||||| |||||| | | || || |||||| ||||| |||||| Sbjct 30770 TTCCCACTCAGACATCATGAGATTTGGCAGTTTTATAAGAAGGCTGTCGCCTCGTTTTGG 30711 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGA 125103 || ||||||||||| ||| || ||||| || |||||||||||| Sbjct 30710 ACTGTCGAAGAGGTGGATTTGGGAAAGGATATGAACGATTGGGAGA 30665 >seq2416 Length=15437 Score = 118 bits (130), Expect = 2e-21 Identities = 203/293 (69%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||||||| || |||||| | || ||||| |||||||| | ||| || Sbjct 2622 CTTCTACGGTTTCCAAATCGCCATCGAGAACATCCATTCGGAGATGTACTCGAAACTCAT 2563 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA--CACATGCTCTTTAACGCAATCGACACG 125351 | | ||||| ||||| || | | | |||| || || ||||||||| | | Sbjct 2562 CGCGACATACATCCGCGA--CGAGAAGGAGCGTCACACACTGTTCAACGCAATCTTCGAG 2505 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || || || ||||| | |||| || ||||| || | ||| | Sbjct 2504 TTCGAGTTCATCAAGAAGAAGGCCGACTGGGCTCTTAAATGGATTTCGGATAAGAAGGCG 2445 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| |||||| |||||| | || || |||||||| |||||||||||||| || Sbjct 2444 TCGTTCGCCGAGAGACTGATTGCTTTTGCCGCCGTTGAGGGCATCTTCTTCAGTGGATCG 2385 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || || ||||||||||| | |||||||||||| | ||||| ||| ||||||| Sbjct 2384 TTCGCCTCCATCTTTTGGTTGAAGAAGCGCGGATTGATGCCAGGATTGACGCA 2332 >seq126 Length=90294 Score = 114 bits (126), Expect = 2e-20 Identities = 194/279 (70%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 97985 CAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAATCTACAA 98044 |||||| || ||||||||||||||| || ||||| || || | | |||| Sbjct 9939 CAACAACGGATCCATTCAAAACATTCCCGGAATCCCAGATGACATCAAGGCACTCTATCT 9880 Query 98045 GACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTA 98104 || || ||||| || | ||| | | ||||| ||||| ||||| | || | || Sbjct 9879 CACCGTGTGGGAAATCTCTCAGAAGGAGATCATCGAGATGGCCGCCGATCGTGGAGCATA 9820 Query 98105 CATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTA--CAGTCGTATG 98162 |||||| || ||||||| |||| | || | || |||| | ||| ||| | || Sbjct 9819 CATTGATCAATCTCAATCGCTCAACATTCACATGGCTAAGCCAAGCTACGCAGCC--ATC 9762 Query 98163 ACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGA 98222 || ||||| ||||| |||| |||||| ||||| |||||||| || ||||||||| || | Sbjct 9761 ACATCGATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGGAATGTACTATTTGCGT 9702 Query 98223 ACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || ||| | ||| ||||||| | | ||| || || ||| Sbjct 9701 ACCAAGCCAGCCGTCAATGCCGTTCAATTCACTGTCGAC 9663 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 |||||||| ||| ||||| |||||||||| ||| |||||||| || || | Sbjct 10773 GAGACTGGTCTTCCTTACATCACCTACAAGGATGCCGCCAATCGCAAGTCAAATCAGCAG 10714 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCG 97328 || | || ||||||||| ||||||| || ||||||||||| | |||||| | |||| Sbjct 10713 AACCTCGGAACCATCAAGTGCTCCAACCTTTGCACGGAAATCATCGAGTACTCTGCTCCA 10654 Query 97329 GACGAGACGGCAGTTTGCGTTCTGGCATC 97357 || |||| || |||||| ||| || || Sbjct 10653 GATGAGATCGCTGTTTGCAATCTCGCCTC 10625 >seq11978 Length=497 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || ||||||||||| || ||||| | || || || ||| || || || ||||| Sbjct 454 ATTGAACAAGAGTTCCTCACCGAGGCTCTTCCAGTAGACATAATCGGAATAAACTGTCGC 395 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 | |||| | ||||||| |||||||| || |||| | | || ||||||| || Sbjct 394 ATGATGTCCCAGTACATTGAGTTTGTCGCCGATCATTTGCTCGCCGAGTTGGGATGCGAG 335 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837 ||| | ||||| | ||||| ||||| || |||||| | ||| || | || || ||| Sbjct 334 AAGTTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGAAAG 275 Query 125838 ACCAACTTTTTCGAGAAG 125855 |||||||| ||||||||| Sbjct 274 ACCAACTTCTTCGAGAAG 257 >seq51 Length=128450 Score = 89.7 bits (98), Expect = 8e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 || || |||| || ||||| || |||| |||||||||||| ||||| || | | | | Sbjct 82408 CCATGAGTCAAATGTCCTCCATCTGGCAAATCGAGTCCCATAATTCTTCCATTGGCTCCA 82349 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 ||||| ||||||| ||||| ||||| || ||| || ||| || ||| || || Sbjct 82348 ACGATAGCAGTGTAGACGGCGAAGTTAGCTGGCGATCCGGAGAGCGATTGAACGTTGACG 82289 Query 127567 CCCCATTCGGACTCGTTCAAAT-TGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTC 127625 ||||| | || || | || ||| |||| || |||| || ||| || || | || Sbjct 82288 CCCCACTTGG-CTGGATCCAATCCGAACACTTCGAGAGCTCTCTGTTGGCAGAGGATCTC 82230 Query 127626 GATGCGATCGATAAACTCGTTACCACCATAGTATCG 127661 || ||||||| |||||||| || || ||||| || Sbjct 82229 CATCTGATCGATGAACTCGTTTCCTCCGTAGTAACG 82194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740917833694360