Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_004683.1 Length=57050 Score E Sequences producing significant alignments: (Bits) Value seq5773 87.8 7e-13 >seq5773 Length=4990 Score = 87.8 bits (96), Expect = 7e-13 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 48942 CGGTGAGGGCTATCACCGTGCGGCAGCCATGGGCATGGCAAATCATCAACCAGCGCAAGA 49001 || ||||| | | || || |||||||| ||||||||| |||||| || | ||| Sbjct 1043 CGATGAGGATTCTGACAGTTCGGCAGCCGTGGGCATGGGCGATCATCCACGGAGGGAAGG 984 Query 49002 ACATCGAGAACCGGACCCGCAACATCGCCGGAAAGTACCGCGGGCCCGCCGCGATCCACG 49061 || |||||||||| ||||||||||||||| | ||||| || || | |||||| |||| Sbjct 983 ACGTCGAGAACCGAGTCCGCAACATCGCCGGTGACTACCGTGGCCCGGTCGCGATTCACG 924 Query 49062 CCGCCCTC 49069 | ||| || Sbjct 923 CGGCCATC 916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 182405337714984