Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1737 116 3e-21 seq1197 93.3 3e-14 >seq1737 Length=20200 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || |||||||| ||| ||| | | | || || Sbjct 9799 AACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTC 9858 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | ||||| ||||| || || |||||||||||| ||||| Sbjct 9859 AAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTG 9918 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||||||| | || || || | |||||| || || Sbjct 9919 GATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTT 9978 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 ||| |||||||| || || || |||||||| |||||| Sbjct 9979 ACCCGTCAGAGTCTTGACGAAGATTTGCATGACTGAAAA 10017 >seq1197 Length=26491 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || || || || ||||| ||| ||| |||| | || || Sbjct 22671 ACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCG 22730 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | || | | ||||||||| |||||||||||| ||||| | Sbjct 22731 AGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTGA 22790 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| |||| ||||| || | || || || || || || || || Sbjct 22791 ATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTTT 22850 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || ||||| ||||| Sbjct 22851 CCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362111837045601