Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1197 152 1e-31 >seq1197 Length=26491 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| ||||| || |||||||| || || || ||||||||||| Sbjct 23186 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGTTGTTTTCCG 23245 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || ||||||||||| || || |||||||| || || || ||||| || || Sbjct 23246 GCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTG 23305 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||||| | ||| || || || || || ||||| ||||| | || Sbjct 23306 ACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTC 23365 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 23366 TTGACAAAGATCTGCAT 23382 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| ||||| || |||||||| || || || || || ||||| Sbjct 22683 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGCTGCTTTCCG 22742 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || || ||||| || || || |||||||| || ||||||||||| || || Sbjct 22743 GCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTG 22802 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || || | || |||||||| ||||| || ||| Sbjct 22803 ACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTTTCCAGTGAGAGTT 22862 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 22863 TTCACGAAAATCTGCATT 22880 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || ||||||||||| || || |||||||| |||||||||||||| || || || || || Sbjct 22524 AGTCTCTGTTGATCTGGTGGGATTCCTTCCTTATCCTGAATCTTGGCCTTGACGTTCTCG 22583 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAAT 104551 | ||| ||| || ||| ||||| || || |||||||| || || || || || || || Sbjct 22584 ATGGTGTCGGAAGCTTCGACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAG 22643 Query 104552 ATCTGCAT 104559 |||||||| Sbjct 22644 ATCTGCAT 22651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151173265271788