Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq194 91.5 1e-13 >seq194 Length=74980 Score = 91.5 bits (100), Expect = 1e-13 Identities = 120/165 (73%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCG---CTGTTTCCGAAGTTAAAC 5386 ||||| || || || || |||||||| |||||||||||| ||||| |||||| || Sbjct 22541 AGCTGGGCAATTCTATCGCCCTTCTTCACCTCAAAGTCGGCACTGTT---GAAGTTGAAT 22485 Query 5387 AGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATA 5446 | | || ||| | || || ||||| ||||||||| ||||| || || ||||| Sbjct 22484 AAGAGAACTTTGACTTCTCCACGATAGTCGCTGTCGATAACACCAGCCCCGACATCGATG 22425 Query 5447 AAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAG 5491 || || ||| | || || || || |||||||||| || |||||| Sbjct 22424 AAATGCTTGGCAGCCAGTCCAGATCGTGGTGCTACTCGGCCGTAG 22380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447664986014320