Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1197 102 7e-17 >seq1197 Length=26491 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||||||| |||||||| || | ||| || ||||||| ||||| Sbjct 21651 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTG 21710 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || |||||||||||||| || | | ||||||||| ||||| Sbjct 21711 CTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTT 21770 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | || ||||| || ||||| || ||||| Sbjct 21771 AGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGT 21830 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 |||||| || || || |||||||| Sbjct 21831 GAGAGTCTTGACGAAGATCTGCAT 21854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421172850041261