Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1197 138 1e-27 seq1737 91.5 1e-13 >seq1197 Length=26491 Score = 138 bits (152), Expect = 1e-27 Identities = 174/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | || || |||||||| | ||| | Sbjct 22129 TTTGCATTCCTCCTCTGAGGCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGT 22188 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||| | || || | |||||| ||||| |||||| | ||||| | ||| ||||| Sbjct 22189 AGTCGG--AGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTG 22246 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||| ||||| ||||| ||||| | || || ||||||||| | | ||||||| Sbjct 22247 ATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGA 22306 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 22307 GGCTTCAACCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||| |||||||| || | || || ||| | ||| | |||||| Sbjct 22670 CACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTC 22729 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| |||||| | ||||| | |||||| || ||||| ||||| ||||| ||||| | Sbjct 22730 GAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTG 22789 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || |||||||| ||| ||||||| ||||| || | ||||| || || Sbjct 22790 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTT 22849 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||||||||| || |||||||| Sbjct 22850 TCCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | ||| |||||||| || | || || ||| | ||| | |||||| Sbjct 23174 ACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCG 23233 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||||||| | ||||| | ||| || |||||||| || || ||||| ||||| | Sbjct 23234 AGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGG 23293 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| | | || || | | ||||| || | |||||||| ||| Sbjct 23294 ATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTT 23353 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||| || |||||||||||||| Sbjct 23354 CCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | || | || | || | ||| || ||||| || | ||| ||||| | Sbjct 23384 CCTCCTCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGAC 23443 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||| ||||| |||||| | ||||| | ||||||||||||||| || Sbjct 23444 AAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGG 23503 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||||||| ||| || || | ||||| Sbjct 23504 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACT 23563 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| |||||||| || || || || ||||||||||| Sbjct 23564 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 23610 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | || | || | ||| || ||||| || | ||| || || Sbjct 24113 CATTCCTCCTCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 24172 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | ||| | |||||| ||||| |||||| | ||||| | ||||||||| ||||| Sbjct 24173 CGAAAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGG 24232 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || || || ||||| | ||||| ||||||||| ||| ||||||| || Sbjct 24233 TGGGATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTC 24292 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || | ||||| ||||||||||| | ||||| || ||||| |||||| || Sbjct 24293 CACCTCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGATT 24347 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || |||||||| | ||| || ||| || ||| ||||| ||||| ||||| Sbjct 21658 GTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCA 21717 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| || | ||||||||||| || || ||||| ||||| | ||||| |||||| Sbjct 21718 GCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTG 21777 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| ||| || |||| | || || || | |||||||| ||||| || ||||| Sbjct 21778 ACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTC 21837 Query 94991 TTCACAAAGATCTGCAT 95007 || || ||||||||||| Sbjct 21838 TTGACGAAGATCTGCAT 21854 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| || | ||||||||||| ||||| ||||| ||||| | || || Sbjct 23012 TTACCGGCGAAGATCAAGCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTG 23071 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| ||| ||||||| | ||||| || | ||||| || |||||||| Sbjct 23072 GCCTTCACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCAGTC 23131 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 | ||| || || ||||||||||| Sbjct 23132 AAAGTCTTGACGAAGATCTGCAT 23154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| | ||| ||||||||||| ||||| ||||| || || | || || Sbjct 23743 TTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTG 23802 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| ||| | | ||| || | ||||| || | |||||||| |||||||| Sbjct 23803 GCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAGTG 23862 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| ||||||||||| Sbjct 23863 AGGGTTTTCACGAAGATCTGCAT 23885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| || | ||||||||||| || || ||||| ||||| | || || ||||||| Sbjct 22000 CAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGA 22059 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| || || | | ||||| || | |||||||| |||||||| | ||| | Sbjct 22060 CGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCT 22119 Query 94992 TCACAAAGATCTGCAT 95007 | || ||||| ||||| Sbjct 22120 TGACGAAGATTTGCAT 22135 >seq1737 Length=20200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || || ||||| || | ||| || ||| | ||| |||||| Sbjct 9800 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCA 9859 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| | ||||| || | |||||||||||| ||||| ||||| ||||| | Sbjct 9860 AGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGG 9919 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| ||| || || | ||||| || | || || || || Sbjct 9920 ATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTA 9979 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || ||||| || || ||||| |||||| Sbjct 9980 CCCGTCAGAGTCTTGACGAAGATTTGCATG 10009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448205682849960