Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq6725 120 1e-22 >seq6725 Length=3608 Score = 120 bits (132), Expect = 1e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 5738 TCCATGGATCGTTGGCTCGCGCGATCGCTGCCATCGGCGGCGGGCTGACGCTGTTACCGC 5797 |||| || ||||| || || |||||||| ||||| | |||||| |||||| ||||||| Sbjct 200 TCCAGGGGTCGTTCGCGCGGGCGATCGCCGCCATGTGGGGCGGGGAGACGCTATTACCGC 141 Query 5798 ACATATGCACCTGTTCGGTTTTGCTGAACGGCTTGCCGTCAGCGCCGCGGTCGATGATGT 5857 ||||||||||||| || | || ||||| |||||| || |||| ||| | Sbjct 140 ACATATGCACCTGCTCTGACTTCGTGAACTTGCGGCCGTCGTGCCCATGGTCAATGCGAT 81 Query 5858 AGTCGGTCGGAAATCCCTGGGCTCGGTACAGTTCGGGCGGTTGCAGCATCCGCAAGCAGA 5917 ||||| || || || || || ||||||| || ||||||||||||| |||| | || Sbjct 80 AGTCGTCTGGGAAGCCTTGTGCGCGGTACAACTCACGCGGTTGCAGCATGCGCAGACCGA 21 Query 5918 TGTCGACTATCACGTAGGG 5936 |||| || | |||||||| Sbjct 20 TGTCCACCACGACGTAGGG 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208460420517076