Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq60 192 9e-45 seq8649 188 1e-43 seq8077 165 1e-36 seq30 159 5e-35 seq607 123 4e-24 >seq60 Length=118088 Score = 192 bits (212), Expect = 9e-45 Identities = 188/240 (78%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || ||||||||||||||||| |||||||| || Sbjct 859 GCCAAGCGCCATCGCAAGGTC-CTTCGTGACAACATCCAAGGAATCACGAAGCCAGCAAT 801 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| || | | || |||||||||||| |||||||| | |||| ||||||| Sbjct 800 TCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAAGAGAC 741 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||| | |||||| ||| ||| |||| |||||| || ||| ||| Sbjct 740 TCGTGGAGTTCTTAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGA 681 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||||||| ||||||| ||||||| || ||||| || ||||| Sbjct 680 GCACGCCAAGAGAAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGG 621 >seq8649 Length=1803 Score = 188 bits (208), Expect = 1e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| |||||||||||||||||||| |||||||| || Sbjct 1471 GCCAAGCGCCATCGCAAAGTTCTTCGTGATAACATCCAAGGAATCACGAAGCCAGCAATT 1530 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | || |||||||||||| |||||||| | |||| || || | | Sbjct 1531 CGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAACT 1590 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| |||| |||||| | ||| |||| Sbjct 1591 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTTACCTACTGCGAG 1650 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||||||||| | ||||| |||||||||| ||||| |||||||| Sbjct 1651 CACGCCAAGAGAAAGACTGTCACTGCTATGGACGTCGTCTATGCTTTGAAGCGTCAAGGA 1710 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 | | | || || || ||| | |||| ||| ||| Sbjct 1711 AGAACTCTGTACGGATTCGGAGGATAATTCTCTTATC 1747 >seq8077 Length=2227 Score = 165 bits (182), Expect = 1e-36 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | |||||| || ||||||||||||||||| || ||||| || Sbjct 1406 GCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAACCAGCCATT 1465 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || | | || |||||||||||| | |||||| | |||| || || | Sbjct 1466 CGCCGCCTTGCCAGAAGAGGAGGAGTCAAGCGTATTTCTGGACTCATCTACGAGGAAACC 1525 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | ||| | |||||| ||| ||| || | |||||| || ||| |||| Sbjct 1526 CGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATTCGTGATGCCGTCACCTACTGCGAG 1585 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| | ||||| |||||||||| ||||| |||||||| Sbjct 1586 CACGCCAAGAGAAAGACTGTCACTGCTATGGACGTCGTCTATGCCTTGAAGCGTCAAGG 1644 >seq30 Length=152714 Score = 159 bits (176), Expect = 5e-35 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16482 AGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCT 16541 ||||||||||||||||||| |||||||||||||||||||||||| |||| ||| | ||| Sbjct 70436 AGCCAGCTATCCGTCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCCGGACTTATCT 70495 Query 16542 ATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCC 16601 |||| |||| |||| ||| ||||| | |||||| ||| ||| |||| || || || Sbjct 70496 ATGAGGAGACACGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGCGACGCCGTCA 70555 Query 16602 ACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGA 16661 ||| ||||||||| || | ||||| |||||| | ||||| ||||||| || ||| Sbjct 70556 CCTACTGCGAGCACGCAAAGAGAAAGACAGTCACCGCTATGGACGTCGTCTACGCCCTGA 70615 Query 16662 AACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | ||||| || | | | || ||||| ||| | ||| Sbjct 70616 AGCGTCAGGGAAGAACTCTCTACGGTTTCGGAGGATAA 70653 >seq607 Length=40012 Score = 123 bits (136), Expect = 4e-24 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 ||||| |||||| ||||||| |||||||||||||| |||||||||||||| || || Sbjct 39576 AAGCGCCATCGCTTGACTCTTCGTGATAACATCCAAGGTATCACCAAGCCAGCCATTCGC 39517 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 ||||| || | | || |||||||||||| |||||| | | |||| || || | |||| Sbjct 39516 CGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGAACTCATCTACGAGGAAACTCGT 39457 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 | ||| | ||||| ||||| ||| || |||| |||||| Sbjct 39456 GGAGTTCTTAAGATTTTCCTTGAGAAAGTCATCCGTGATGC 39416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79061246760873