Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq126 203 4e-47 seq2416 95.1 2e-14 seq433 91.5 2e-13 >seq126 Length=90294 Score = 203 bits (224), Expect = 4e-47 Identities = 479/719 (67%), Gaps = 6/719 (1%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 |||||||| |||||||| | || | ||| || || || || |||||||||||| Sbjct 11082 TCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 11141 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || ||| | || || || ||||| || ||||| |||||||| ||||| | || Sbjct 11142 CAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAAC 11201 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | | | | || || ||| || ||||| ||| | |||| | | | Sbjct 11202 AGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAA 11261 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 | ||| | ||||| || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 11262 ACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCT 11321 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | || | |||||||| || ||||| | | ||| || || | || || ||| Sbjct 11322 TGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGAT 11381 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGAC 63495 | || ||||| || | ||| |||| ||||||| || ||| | |||| | | Sbjct 11382 GTTCCGTTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTGA--GTC 11439 Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555 | ||||| || || | |||||||| | |||||| | || | ||||| ||||| || Sbjct 11440 CGATTCCACCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGA 11499 Query 63556 CTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || ||| ||| |||| || || |||| ||| |||||| || |||| | ||| Sbjct 11500 GAATCGAATCCTCGCTCATTGTCAACAAGAAG-CAGGAAGACATCTGTGGACGGCAGGTT 11558 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || | || || | ||||| ||||| || || | | ||||| | ||||||||| Sbjct 11559 CCAGAGTTGAAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTAC 11618 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 ||||| || || | | || || | || ||||| | ||||| ||||| | ||| Sbjct 11619 GTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATC 11678 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 || || || | ||||||||| | ||||| || || | | ||| || ||||| || Sbjct 11679 TGTTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTC 11738 Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || ||||| ||| |||| ||| |||| || || || | || | ||||| || || Sbjct 11739 TTGAATCCAAAGTAGCTGTAGGAATAGTCACGATCATACACGATGGCGGAGTTCAGCTT 11797 Score = 140 bits (154), Expect = 4e-28 Identities = 328/494 (66%), Gaps = 7/494 (1%) Strand=Plus/Plus Query 61984 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 ||||||| | |||||||||| || | | || || || ||||| | ||||||||||| Sbjct 9659 CCTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTC 9718 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || || || || |||||||||| || ||||| || | | || || | Sbjct 9719 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTG 9778 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 | | || || || || || | |||||| |||||| ||| | ||||| | || || | Sbjct 9779 GCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGG 9838 Query 62164 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62223 |||| | |||||| ||| || | |||||||| | || ||| | | ||| || | Sbjct 9839 CCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGT 9898 Query 62224 CTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62278 | ||||| | || ||| || |||||||||| | || || | | |||||| Sbjct 9899 CATCTGGGATTCCGGGAATGTTTT--GAATGGATCCGTTGTTGGCGATGAGTCGATTCTT 9956 Query 62279 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62338 ||||||||| |||| ||| |||||| ||| | | || | || |||||||| | Sbjct 9957 CATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAAT 10016 Query 62339 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGA 62398 || || ||||| || | || | || | |||||| || ||| || || || | ||| Sbjct 10017 CTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGA 10076 Query 62399 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62458 || || ||||| | ||||| || || || ||||| ||||| || |||| || | ||| Sbjct 10077 TTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 10136 Query 62459 ATTTCTAAGACCGT 62472 || | || |||| Sbjct 10137 GTTGCGAACTCCGT 10150 >seq2416 Length=15437 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/169 (73%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 33349 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33408 |||||| ||| | ||| ||||| | || ||||| || | |||||| ||||| ||||| Sbjct 2326 TTGGAATGCGTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAAC 2385 Query 33409 GATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33468 |||||| |||||||| || || || || ||||| ||||| |||||||| | | || Sbjct 2386 GATCCACTGAAGAAGATGCCCTCAACGGCGGCAAAAGCAATCAGTCTCTCGGCGAA--CG 2443 Query 33469 GCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 ||| || | | ||||| || ||||||| ||||||||||| || Sbjct 2444 ACGCCTTCTTATCCGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTT 2492 >seq433 Length=49269 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/172 (72%), Gaps = 7/172 (4%) Strand=Plus/Plus Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 || |||||| ||| | ||| ||||| | || ||||| || | |||||| ||||| ||| Sbjct 30130 TCATTGGAATGCGTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCG 30189 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || |||||| |||||||| || || || || || || ||||| |||||||| | | Sbjct 30190 AAAGATCCACTGAAGAAGATGCCCTCGACGGCGGCGAAAGCAATCAGTCTCTCGGCGAA- 30248 Query 33466 CCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 || ||| || | | ||||| || ||||||| ||||||||||| || Sbjct 30249 -CGACGCCTTCTTATCCGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTT 30299 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 |||||| || || || || ||||| || || || ||||| || | || || || || Sbjct 29752 TTGGTACTCGGAGACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTC 29811 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 |||||| || || || || | || || || | || | ||||||| || | || || Sbjct 29812 CATGAAGTCGAAGGGGTTCTTCACTTTGTACAACTTCTCGCATCCCAACTCGGCAAGCAG 29871 Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 ||| ||||| || || || || ||||| ||| |||||||| || | | Sbjct 29872 ATGATCGGCGACAAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGATCATGTC 29931 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATC 33242 |||||||||||| | ||||| || ||||| ||||||| || ||||| Sbjct 29932 GACTGGAAGAGCCTCGGTAAGGAACTCTTGCTCAATGGCGACGGCATC 29979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622828365034760