Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1197 116 4e-21 seq126 89.7 5e-13 >seq1197 Length=26491 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || |||||||| | |||||| ||||| | ||| | | Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | ||||| ||||| ||||| ||||| || || || |||||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| || | || ||| ||||||||||| |||| |||| || |||||| || Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| ||| | || |||| || | ||| | ||||| Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGAGG 23156 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| || ||||||||| |||||||| | || | || | Sbjct 24343 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCT 24284 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| || || ||||| || || || || || || || Sbjct 24283 GACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 24224 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||| || || ||||| |||| |||| | ||||| ||| Sbjct 24223 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAAC 24164 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || || || || || ||| ||||||| || || | || |||||||||| Sbjct 24163 ATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCCGTCTCAGAGGAGGAA 24115 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| | |||||||| | ||||| | ||| | || | Sbjct 22880 AATGCAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTC 22821 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | ||||| |||||| ||||| ||||| || || || || || Sbjct 22820 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCA 22761 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||||||||| | || ||| || || ||||| |||| |||| || |||||| || Sbjct 22760 ACAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAA 22701 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || ||||| ||| |||| |||| || | ||| | ||||| Sbjct 22700 TATCCAGAAGGAATCCACTCTCCACTTGGTGCTCCGCCTTCGTGGAGG 22653 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || | |||||||| | |||||| ||||| | ||| | Sbjct 23611 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTC 23552 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| ||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 23551 CGATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 23492 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | || ||| || || || || |||| | | | | || || || Sbjct 23491 GCAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACAA 23432 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || || || ||| ||||||| || || | || |||||||| Sbjct 23431 CATCCAGAAGGAGTCGACTCTCCATCTCGTTCTTCGCCTCAGAGGAGG 23384 >seq126 Length=90294 Score = 89.7 bits (98), Expect = 5e-13 Identities = 183/272 (67%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 || |||||||||| | || | || || ||||| | |||||||||||| || || || Sbjct 9667 ACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTCCAGTCTTG 9726 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGGCC 147233 | ||||| | ||| ||| ||| || |||| | || ||| |||| || ||| Sbjct 9727 AGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTGGCTTAGCC 9786 Query 147234 ACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGTCC 147293 | || ||||||||||| ||||| ||||| | ||| || || |||||||| || Sbjct 9787 ATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGGCCATCTCG 9846 Query 147294 AACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTGGA 147353 | | | || || |||||||| |||| |||| |||||||| | | ||| Sbjct 9847 ATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGTCATCTGGG 9906 Query 147354 ATTTCATCAATATTTTGTACAGATCCGTTGTT 147385 ||| | ||| ||||| | ||||||||||| Sbjct 9907 ATTCCGGGAATGTTTTGAATGGATCCGTTGTT 9938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478571089163920