Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq126 158 3e-33 >seq126 Length=90294 Score = 158 bits (174), Expect = 3e-33 Identities = 401/602 (67%), Gaps = 16/602 (3%) Strand=Plus/Minus Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 || || |||||||| || || || ||| | ||||| || || || || ||||| | Sbjct 11701 GAAATCGTTGAACGGCCACAACAGATGCTGATGCGCGTCGCCATCGGAATCCACGGAAAC 11642 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCT-CGTGTATTCACGC 363553 || | | ||||| || || || || || || ||| || ||| | || || | Sbjct 11641 GACATCCAGGCCGCCATCGAGACGTACAATCTGATGTCTGAGCGCTACATG-----ACCC 11587 Query 363554 ACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTC 363613 | || |||| || | | ||| ||||||| | ||||||||||||||| ||||| Sbjct 11586 ATGCTTCGCCTACTCTTTTCAACTCTGGAACCTGCCGTCCACAGATGTCTTCCTGCTTCT 11527 Query 363614 TTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTC 363673 | | | ||||| || ||||| || || |||| ||||| || ||| | || || | Sbjct 11526 TGTTGACAATGAGCGAGGATTCGATTCTCGGAATCTACGACACTCTGAAGCAATGCGCCC 11467 Query 363674 TTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAA 363731 |||| || |||| ||| || ||||| || | | || | || || | ||||| || | | Sbjct 11466 TTATCTCTAAGAGTGCCGGTGGAATCGGACTCAACG-TGCATAAGATCCGTGCCACTGGA 11408 Query 363732 CAGTTACATTCGC-GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGT 363790 | || |||| || || ||| || ||||| || | || ||||||||||| | Sbjct 11407 TCG--ACCATCGCTGGAACCAACGGAACATCCAATGGACTCATACCGATGCTTCGTGTTT 11350 Query 363791 TTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTA 363850 |||| || || | || ||||| || || || |||||| ||| || || || | Sbjct 11349 ACAACAACACCGCCCGTTATGTCGATCAAGGAGGCAACAAGCGCCCAGGAGCCTTCGCCA 11290 Query 363851 TGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGG 363910 | || |||||||| || |||||| |||| ||||| || || || || ||||| | Sbjct 11289 TTTACCTCGAGCCATGGCACGCCGATGTTTTCGAGTTCGTTTCCCTTCGCAAGAACACCG 11230 Query 363911 GAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTA 363970 || ||| || |||||| |||||||||||| || || ||| || | || | ||| | Sbjct 11229 GACCAGAAGAGGAGCGTGCTCGTGATCTGTTCCTGGCTCTCTGGATTCCAGATCTTTTCA 11170 Query 363971 TGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTC 364030 ||||||| || ||| | || ||||||| | | |||||| ||| || ||||| | Sbjct 11169 TGAAGCGTGTCGAGAAGGACCAGGATTGGTCGTTGATGTGCCCATGCGAGTGCCCAGGAC 11110 Query 364031 TT 364032 || Sbjct 11109 TT 11108 Score = 118 bits (130), Expect = 3e-21 Identities = 275/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| || || || ||||||||||||||||| | | || || Sbjct 10124 GCTCCAATGCCAACTGCTTCCACCGCGCAAATCCTCGGAAACAACGAATCGATTGAGCCA 10065 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || || |||| ||||| || || ||||||||||| || | | | |||||| Sbjct 10064 TACACCTCAAACATTTACTCACGTCGTGTGCTTTCCGGAGACTTCCAGATTGTTAATCCA 10005 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 || | |||||||| | || | || ||||| ||| |||||||| || Sbjct 10004 CACATGCTCAAGGATTTGGTTGAGAGAGGATTGTGGACTGATGAGATGAAGAATCGACTC 9945 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 |||||| || || || | || |||||||| ||| | ||||| || | ||| | | Sbjct 9944 ATCGCCAACAACGGATCCATTCAAAACATTCCCGGAATCCCAGATGACATCAAGGCACTC 9885 Query 364990 TACAAAACCGTATGGGAAATTTC-CATGCGAACTCTCATTGATATGGCGGCCGATCGCGG 365048 || ||||| |||||||| || || | | |||| || ||||| |||||||| || Sbjct 9884 TATCTCACCGTGTGGGAAATCTCTCAGAAGGA-GATCATCGAGATGGCCGCCGATCGTGG 9826 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108 || | || ||| || ||| | ||| | |||| || |||||| || ||| | Sbjct 9825 AGCATACATTGATCAATCTCAATCGCTCAACATTCACATGGCTAAGCCAAGCTACGC--A 9768 Query 365109 GC--TTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || | ||||| ||||| |||||||| ||||| || || ||||| || Sbjct 9767 GCCATCACATCGATGCACTTCTACGGATGGAAGAAGGGACTCAAGACTGG 9718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303098753234102