Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1197 116 3e-21 >seq1197 Length=26491 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || |||||||| | || ||| |||||||||| ||| | Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| ||||| ||||| || || || |||||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||| || |||||||| |||| |||| || ||| || || Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || || ||||| || |||| || || Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGT 23174 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| | |||||||| | || || | ||||||||||| Sbjct 22880 AATGCAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTC 22821 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| |||||| ||||| ||||| || || || || || Sbjct 22820 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCA 22761 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||| || | || ||| ||||| ||||| |||| |||| || ||| || || Sbjct 22760 ACAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAA 22701 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || | || || ||| Sbjct 22700 TATCCAGAAGGAATCCACTCTCCACTTGGTG 22670 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || ||||||||| |||| ||| | || || ||||| Sbjct 24343 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCT 24284 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| || || ||||| || || || || || || || Sbjct 24283 GACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 24224 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153 || ||||| || | || ||| ||||| ||||| |||| |||| Sbjct 24223 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAA 24181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429856034725455