Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1197 161 9e-35 seq126 91.5 1e-13 >seq1197 Length=26491 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||||||||||||||| |||||||| ||| | Sbjct 21628 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 21687 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| ||||||||||| || || ||| Sbjct 21688 AAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGG 21747 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| |||||| ||||| | ||| | ||||| | || || | Sbjct 21748 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACC 21807 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| ||||| || ||||| |||||||| Sbjct 21808 TCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | ||||||||||| || ||||||||||| || |||||| Sbjct 23396 CGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCA 23455 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| | | ||||| || || ||||||||||| ||| Sbjct 23456 TCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTG 23515 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | ||||||| | |||| |||| ||| | | Sbjct 23516 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATG 23575 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || ||||| |||||||| Sbjct 23576 GTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 23610 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | ||| ||||||||||| |||||||| ||| | ||| || Sbjct 22149 CGGAGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCA 22208 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| | | |||||| || || || |||||||| ||| Sbjct 22209 TCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTG 22268 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || | || || | || | || | | Sbjct 22269 TCTTGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATG 22328 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || || || ||||| |||||||| Sbjct 22329 GTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 22363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | ||| | ||||||||||| || |||||||| || | || | Sbjct 24128 ACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCC 24187 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 ||||| |||||||| || ||| |||| | | |||||||| || |||||||| || || Sbjct 24188 ATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTT 24247 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| |||||| ||||| | ||| | || || | | ||| | || | ||| | Sbjct 24248 GTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGAT 24307 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 ||||| || || | ||||| ||||| || ||||||| Sbjct 24308 CGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATGA 24345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131091 CTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTT 131150 ||| || || |||| ||||||||||| || || ||||||||||| ||||| ||| || Sbjct 21992 CTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTT 22051 Query 131151 CTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 ||||| | ||| | ||||||| || |||| |||| ||| | ||| || || || Sbjct 22052 GGCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGT 22111 Query 131211 TAGAGTTTTTACGAAAATCTGCAT 131234 | ||| || ||||| || ||||| Sbjct 22112 CAAAGTCTTGACGAAGATTTGCAT 22135 >seq126 Length=90294 Score = 91.5 bits (100), Expect = 1e-13 Identities = 279/429 (65%), Gaps = 2/429 (0%) Strand=Plus/Plus Query 144740 GCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCG 144799 ||||||||||| |||||||||||||| || || ||||||||| ||| |||| | Sbjct 9691 GCTGGCTTGGTACGCAAATAGTACATTCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAG 9750 Query 144800 TGTATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTT 144859 || ||||| || || ||||| | |||| |||| | || |||||||| | Sbjct 9751 TGCATCGATGTGATGGCTGCGTAGCTTGGCTTAGCCATGTGAATGTTGAGCGATTGAGAT 9810 Query 144860 TGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTCATTTCC 144919 ||||||||| | || || |||||||||||||| || || || |||||| Sbjct 9811 TGATCAATGTATGCTCCACGATCGGCGGCCATCTCGATGATCTCCTTCTGAGAGATTTCC 9870 Query 144920 CAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGAC 144979 || |||| || | || |||| || || || ||| ||| ||||| || Sbjct 9871 CACACGGTGAGATAGAGTGCCTTGATGTCATCTGGGATTCCGGGAATGTTTTGAATGGAT 9930 Query 144980 CCCTTGTGCGCAAATATGGCG-TTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAA 145038 || |||| || || | || ||| ||| || || ||| | | || | ||| Sbjct 9931 CCGTTGTTGGC-GATGAGTCGATTCTTCATCTCATCAGTCCACAATCCTCTCTCAACCAA 9989 Query 145039 GTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATA 145098 || | | | || |||| || | ||| || || |||| | ||||||||| | || Sbjct 9990 ATCCTTGAGCATGTGTGGATTAACAATCTGGAAGTCTCCGGAAAGCACACGACGTGAGTA 10049 Query 145099 CACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGC 145158 | ||| || ||| | || |||| || ||||| || || |||||||| ||||| | || Sbjct 10050 AATGTTTGAGGTGTATGGCTCAATCGATTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGC 10109 Query 145159 GGTGGGCAT 145167 || ||||| Sbjct 10110 AGTTGGCAT 10118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471922757658240