Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4324 98.7 7e-16 seq1197 93.3 3e-14 seq754 86.0 4e-12 >seq4324 Length=7871 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 2428 CTCTCTCTTCAAAGTCCTTTGCAACTTTCCCTCACGGTACTTGTTCGCTATCGCAATCGA 2369 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 2368 GTCGATATTTAGCCTTA 2352 >seq1197 Length=26491 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | || | || | ||| ||||| |||||| || || |||||||||| Sbjct 23382 TACCTCCTCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAG 23441 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| | || || | || |||||||| || || || | ||| ||||| | | Sbjct 23442 ACAAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTG 23501 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || || ||| || |||| || ||||| | ||| | Sbjct 23502 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGA 23561 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || || | ||| || ||||| |||||||| Sbjct 23562 CTTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 23610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || |||||| ||||| || |||||||| || || | | | | | || || Sbjct 22670 CACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTC 22729 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || |||||||| || || || | |||||| || | || | ||||| |||||| Sbjct 22730 GAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTG 22789 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | || || || | || ||||| || || ||||| || Sbjct 22790 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTT 22849 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||||||||||| |||||||| Sbjct 22850 TCCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 >seq754 Length=35677 Score = 86.0 bits (94), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 ||||| || ||| || || || |||||||||||||||| ||||| ||| || Sbjct 33011 AACGTGAACCGTGCCGTCGCTGATCCGTTCTACCGCTACAAGATGCCAAAGCTCTCGGCG 33070 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || ||||| || ||||| ||||| || || |||||||| |||||| |||| |||| Sbjct 33071 AAAGTCGAAGGCAAGGGCAACGGAATCAAGACCGTCATCTCGAACATGGCTGATATCGCG 33130 Query 6294 AAGGCGCTCGGACGCCCTGCCA 6315 ||||| |||| ||||| |||| Sbjct 33131 AAGGCTCTCGAGCGCCC-GCCA 33151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334884902018891