Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq126 212 8e-50 seq433 82.4 1e-10 >seq126 Length=90294 Score = 212 bits (234), Expect = 8e-50 Identities = 481/719 (67%), Gaps = 6/719 (1%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| |||||||| | || ||||| || || || || |||||||||||| Sbjct 11082 TCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCACTCGCATGGGCACATCAACGAC 11141 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || || ||| | || || || ||||| || ||||| |||||||| ||||| | || Sbjct 11142 CAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAGAGCCAGGAAC 11201 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | | | | || || ||| || ||||| ||| | |||| | | | Sbjct 11202 AGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAACGAACTCGAAA 11261 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||| | ||||| || || | ||| ||||| | |||| || || ||||| ||||| Sbjct 11262 ACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTTGTTGCCTCCT 11321 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | || | |||||||| || ||||| | | ||| || || | ||||||||| Sbjct 11322 TGATCGACATAACGGGCGGTGTTGTTGTAAACACGAAGCATCGGTATGAGTCCATTGGAT 11381 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTA--CTAATTGATAGAC 63350 || || ||||| || | ||| |||| ||||||| || ||| | ||| || | Sbjct 11382 GTTCCGTTGGTTCCAGCGATGGTCGATCCAGTGGCACGGATCTTATGCACGTTG--AGTC 11439 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | ||||| || || | |||||||| | |||||| | || | || || ||||| || Sbjct 11440 CGATTCCACCGGCACTCTTAGAGATAAGGGCGCATTGCTTCAGAGTGTCGTAGATTCCGA 11499 Query 63411 CTATACTATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || ||| || ||| ||| || || || ||| |||||| || |||| | ||| Sbjct 11500 GAATCGAATCCTCGCTCATTGTCAACAAG-AAGCAGGAAGACATCTGTGGACGGCAGGTT 11558 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || | || || | ||||| ||||| || || | | ||||| | ||||||||| Sbjct 11559 CCAGAGTTGAAAAGAGTAGGCGAAGCATGGGTCATGTAGCGCTCAGACATCAGATTGTAC 11618 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 ||||| || || | | || || | || ||||| | ||||| ||||| | ||| Sbjct 11619 GTCTCGATGGCGGCCTGGATGTCGTTTCCGTGGATTCCGATGGCGACGCGCATCAGCATC 11678 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 || || || | ||||||||| | ||||| || || | | ||| || ||||| || Sbjct 11679 TGTTGTGGCCGTTCAACGATTTCCTTGTTAATCTTGAGGAGGTAAGAGCGTTCCAGGGTC 11738 Query 63650 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || ||||| ||| |||| ||| |||| || || || | || | ||||| || || Sbjct 11739 TTGAATCCAAAGTAGCTGTAGGAATAGTCACGATCATACACGATGGCGGAGTTCAGCTT 11797 Score = 131 bits (144), Expect = 2e-25 Identities = 326/494 (66%), Gaps = 7/494 (1%) Strand=Plus/Plus Query 61839 CCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 ||||||| | |||||||||| || | | || || || ||||| | ||||||||||| Sbjct 9659 CCTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACATTC 9718 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | || || || || |||||||||| || ||||| || | | || || | Sbjct 9719 CAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCTTG 9778 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 | | || || || || || | |||||| |||||| ||| | ||||| | || || | Sbjct 9779 GCTTAGCCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGGCGG 9838 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62078 |||| | || ||| ||| || | |||||||| | || ||| | | ||| || | Sbjct 9839 CCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGATGT 9898 Query 62079 CTTCTGGAA-----GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 62133 | ||||| | || ||| || |||||||||| | || || | | |||||| Sbjct 9899 CATCTGGGATTCCGGGAATGTTTT--GAATGGATCCGTTGTTGGCGATGAGTCGATTCTT 9956 Query 62134 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 62193 ||||||||| |||| ||| |||||| ||| | | || | || |||||||| | Sbjct 9957 CATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTAACAAT 10016 Query 62194 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 62253 || || ||||| || | || | || | |||||| || ||| || || || | || Sbjct 10017 CTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCAATCGA 10076 Query 62254 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 62313 || || ||||| | ||||| || || || ||||| ||||| || |||| || | ||| Sbjct 10077 TTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGAAGACT 10136 Query 62314 ATTTCTAAGACCGT 62327 || | || |||| Sbjct 10137 GTTGCGAACTCCGT 10150 >seq433 Length=49269 Score = 82.4 bits (90), Expect = 1e-10 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 32372 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 32431 |||||| || || || || ||||| || || || || || || | || || || || Sbjct 29752 TTGGTACTCGGAGACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTC 29811 Query 32432 CATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 32491 |||||| ||||| || || | || || || | || | ||||||| || | || || Sbjct 29812 CATGAAGTCGAAGGGGTTCTTCACTTTGTACAACTTCTCGCATCCCAACTCGGCAAGCAG 29871 Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 ||| |||||||| || || || ||||| ||| |||||||| || | | Sbjct 29872 ATGATCGGCGACAAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGATCATGTC 29931 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 32599 |||||||||||| | ||||| || ||||| ||||| | ||| || || Sbjct 29932 GACTGGAAGAGCCTCGGTAAGGAACTCTTGCTCAATGGCGACGGCATC 29979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633511126775600