Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1197 127 2e-24 >seq1197 Length=26491 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| || || || || |||| || ||||| ||| || || Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || ||||||||||| || || ||||| |||||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || ||||| ||||| | |||||| | || ||||||| ||||| Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||||| | || || ||| | || | || |||||| Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGTTCTCCGTCTTCGTGGAGGT 23155 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||||||||| || ||| || | Sbjct 22363 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTCT 22304 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || ||||||||||| || |||||||| ||||| Sbjct 22303 GACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCAG 22244 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || ||| | |||||| || ||| ||||||| |||||| Sbjct 22243 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACAAC 22184 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || ||||| || |||||| | || || ||| Sbjct 22183 ATCCAAAAGGAGTCCACCCTTCACTTGGTT 22154 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || |||| || || || ||| || | Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| ||||| ||||||||||| || || ||||| ||||| Sbjct 21794 GATACCATCGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAG 21735 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | ||||| |||||| | ||||| |||||| Sbjct 21734 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAAC 21675 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || ||| | ||| | ||| | || | || ||||| Sbjct 21674 ATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTTCGTGGAGG 21628 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || ||||| ||| | || Sbjct 23610 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCC 23551 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || ||||||||||| || || ||||| ||||| Sbjct 23550 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 23491 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || ||| | |||||| |||||| | || ||||||||| Sbjct 23490 CAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACAAC 23431 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||| | ||| | || | | |||||| Sbjct 23430 ATCCAGAAGGAGTCGACTCTCCATCTCGTTCTTCGCCTCAGAGGAGGT 23383 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| || || || |||||| |||| || || ||||| | | Sbjct 24343 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCT 24284 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| |||||||||||||| || ||||| || || Sbjct 24283 GACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCAG 24224 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || ||| | |||||| | || | || || |||||| Sbjct 24223 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAAC 24164 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | ||| | ||| Sbjct 24163 ATCCAGAAGGAGTCGACTCTCCATCTCGTT 24134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||||| || || || || |||| || ||||| ||| || || Sbjct 22135 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 22076 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || ||||||||||| || || ||||| ||||| Sbjct 22075 GATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 22016 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || ||| | || ||||| || || Sbjct 22015 CAGCGTTTGATCTTTGCTGGTAA 21993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419649933346465