Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1545 104 5e-17 seq330 104 5e-17 seq392 102 2e-16 seq9598 100 6e-16 seq5979 100 6e-16 seq4652 100 6e-16 seq1123 100 6e-16 seq189 100 6e-16 seq163 100 6e-16 seq127 100 6e-16 seq69 100 6e-16 seq14404 98.7 2e-15 seq12639 98.7 2e-15 seq4667 98.7 2e-15 seq2915 98.7 2e-15 seq2610 98.7 2e-15 seq1994 98.7 2e-15 seq1964 98.7 2e-15 seq1510 98.7 2e-15 seq1235 98.7 2e-15 seq476 98.7 2e-15 seq9 98.7 2e-15 seq5498 93.3 9e-14 >seq1545 Length=22242 Score = 104 bits (114), Expect = 5e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 142495 GGTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTG 142554 ||| || | ||||||||||||||||||||||||| | ||||||||||||| || |||| | Sbjct 9390 GGTTAGCTCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCG 9449 Query 142555 GGTTCGAGCCCCACATCGGGCAGAAGT 142581 |||||||||||| ||| |||| || || Sbjct 9450 GGTTCGAGCCCCGCATTGGGCTGATGT 9476 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 6392 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 6451 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 6452 CCCGCATTGGGC 6463 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 7983 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 7924 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 7923 CCCGCATTGGGC 7912 >seq330 Length=57129 Score = 104 bits (114), Expect = 5e-17 Identities = 227/338 (67%), Gaps = 8/338 (2%) Strand=Plus/Plus Query 218540 TTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGC 218599 |||| |||||| |||| || ||||| ||||| || |||||||||| |||| | Sbjct 2271 TTCTCTTCTCGAATCTTGATAACGAACGTTCCATTCCATGCTTGGTGGATGGTTTCAAAC 2330 Query 218600 CATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAA----GAAATT 218655 || ||||| || | || ||||| |||||| | | ||| ||| ||| | Sbjct 2331 CAGGACAGCGAAAAGTTCTTTTTGCTTGTTTCAAGAG--AGCTGA--CAAACGTGAAGTC 2386 Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || || |||| ||| | || |||| | ||||||||||| || ||| Sbjct 2387 AAGGTTGCCCAACTTGCTGGAGCTGTCGCAGAGCTTTCGGCTTACCATCACGGAGAACAG 2446 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 || ||| | ||||| | || || || ||||| || ||||| || ||| Sbjct 2447 TCGTTGATGGGAACGATTGTGAATCTTGCTCAAGATTATGTTGGATCCAACAATATCAAC 2506 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCT 218835 ||||| || || | ||| ||||| ||| ||||||| || |||||||||||||||||| Sbjct 2507 TTGCTTCTTCCAATCGGACAGTTCGGTACTCGTCTCCAAGGAGGAAAGGATAGTGCTTCT 2566 Query 218836 GCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCG 218873 || | || || || || | | || || ||||| || Sbjct 2567 GCTCGTTACATTTTCACTCAACTCTCTCCAGTGACTCG 2604 >seq392 Length=52454 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||| Sbjct 31535 TAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGA 31594 Query 142562 GCCCCACATCGGGC 142575 ||||| ||| |||| Sbjct 31595 GCCCCGCATTGGGC 31608 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 16798 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 16739 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 16738 CCCGCATTGGGCTGATGT 16721 >seq9598 Length=1277 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 9 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 68 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 69 CCCGCATTGGGCTGATGT 86 >seq5979 Length=4631 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 4612 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 4553 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 4552 CCCGCATTGGGCTGATGT 4535 >seq4652 Length=7080 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 5338 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 5397 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 5398 CCCGCATTGGGCTGATGT 5415 >seq1123 Length=27797 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 7228 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 7287 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 7288 CCCGCATTGGGCTGATGT 7305 >seq189 Length=76359 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 38253 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 38194 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 38193 CCCGCATTGGGCTGATGT 38176 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 26975 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 26916 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 26915 CCCGCATTGGGC 26904 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 39933 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 39874 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 39873 CCCGCATTGGGC 39862 >seq163 Length=81324 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 56051 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 55992 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 55991 CCCGCATTGGGCTGATGT 55974 >seq127 Length=90042 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 139 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 198 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 199 CCCGCATTGGGCTGATGT 216 Score = 100 bits (110), Expect = 6e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 1879 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1938 Query 142564 CCCACATCGGGCAGAAGT 142581 ||| ||| |||| || || Sbjct 1939 CCCGCATTGGGCTGATGT 1956 >seq69 Length=115317 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 93048 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 93107 Query 142564 CCCACATCGGGCAGA 142578 ||| ||| |||| || Sbjct 93108 CCCGCATTGGGCTGA 93122 >seq14404 Length=239 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 93 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 34 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 33 CCCGCATTGGGC 22 >seq12639 Length=402 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 402 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 343 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 342 CCCGCATTGGGC 331 >seq4667 Length=7044 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 991 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1050 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 1051 CCCGCATTGGGC 1062 >seq2915 Length=12637 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 3179 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 3238 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 3239 CCCGCATTGGGC 3250 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 9790 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9731 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 9730 CCCGCATTGGGC 9719 >seq2610 Length=14260 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 8633 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 8574 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 8573 CCCGCATTGGGC 8562 >seq1994 Length=18307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 9285 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 9344 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 9345 CCCGCATTGGGC 9356 >seq1964 Length=18485 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 1490 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 1549 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 1550 CCCGCATTGGGC 1561 >seq1510 Length=22543 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 5330 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 5271 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 5270 CCCGCATTGGGC 5259 >seq1235 Length=26062 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 11167 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11108 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 11107 CCCGCATTGGGC 11096 >seq476 Length=46397 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 27444 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 27503 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 27504 CCCGCATTGGGC 27515 >seq9 Length=218193 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| || |||| |||||||||| Sbjct 29847 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 29906 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 29907 CCCGCATTGGGC 29918 >seq5498 Length=5416 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142508 GGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCA 142567 ||||||||||||||||||||| | ||||||||||||| || |||| ||||||||||||| Sbjct 4423 GGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCCCG 4364 Query 142568 CATCGGGCAGAAGT 142581 ||| |||| || || Sbjct 4363 CATTGGGCTGATGT 4350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027635825464501