Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq433 203 6e-47 seq2416 143 5e-29 seq126 98.7 2e-15 >seq433 Length=49269 Score = 203 bits (224), Expect = 6e-47 Identities = 474/716 (66%), Gaps = 62/716 (9%) Strand=Plus/Minus Query 42482 GAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||| ||||| || || ||||| |||| ||||||||| ||||| || ||||| ||||| Sbjct 30459 GAATGAGGTCAAGGTCTCCGAGGCTCGCTTCTTCTACGGTTTCCAAATCGCCATCGAGAA 30400 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | | || || ||| ||||| | || || || | || ||||||| ||| ||||| Sbjct 30399 CATCCATTCGGAGATGTACTCAAAGCTCATCGAGACATACATCCGCGATGAGAAGGAGCG 30340 Query 42602 TAACGGGCTGTTCAAGGCCATG---GAGA-CGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | || |||||||| ||||| ||| ||| | ||||||||||||||| |||| Sbjct 30339 TCACACACTGTTCAACGCCATCTTCGAGTTCGAA----TTCATCAAGAAGAAGGCCGACT 30284 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| || || ||||| | | | || |||||| |||||| ||| | || || Sbjct 30283 GGGCTCTTAAATGGATTTCGGATAAGAAGGCGTCGTTCGCCGAGAGACTGATTGCTTTCG 30224 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 ||||||||||||||||||||||| || | |||||||||||||| ||| | ||| || Sbjct 30223 CCGCCGTCGAGGGCATCTTCTTCAGTGGATCTTTCGCCTCCATCTTTTGGTTGAAGAAGC 30164 Query 42778 AGGTGTCGATGCCCGGACTCAC---------------CTTCTCGA-------ACGA---- 42811 | | |||||| ||| | || |||||| ||| Sbjct 30163 GCGGATTGATGCCAGGATTGACGCATTCCAATGAGTTGATCTCGAGGTGAGCGCGAAAAT 30104 Query 42812 ACTCATC---------------------AGCAGGGACGAGGGGCTGCATAGGGACTTTGC 42850 | ||||| ||| ||||| || || || | ||||| || Sbjct 30103 AATCATCTCGTGCATACCTTCTTTTCTTTTCAGAGACGAAGGTCTTCACCGTGACTTCGC 30044 Query 42851 CTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCAT 42910 ||||||||| | ||||| | || | |||||| | | | ||||| || | || Sbjct 30043 CTGCCTCCTCTACTCGATGCTCCAAA---ACAAGCTCACTCAAGAGCGCATCTACGAGAT 29987 Query 42911 CATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCT 42970 ||| || ||||| | || ||| | |||||||| || || | || || || | | Sbjct 29986 CATTCGTGATGCCGTCGCCATTGAGCAAGAGTTCCTTACCGAGGCTCTTCCAGTCGACAT 29927 Query 42971 GGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT 43030 | |||| |||||| ||| |||| | ||||||| ||| |||||||| ||||| || Sbjct 29926 GATCGGAATGAACTGTCGCCTGATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCT 29867 Query 43031 GTGCC-AGATGGG-TCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAG 43088 |||| || |||| | || | | ||||| | | |||||||||||| |||||| Sbjct 29866 -TGCCGAGTTGGGATGCGAGAAG-TTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAG 29809 Query 43089 AACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 |||||||| | || || ||||||||||| ||||||||||||||| |||| ||||| Sbjct 29808 AACATCTCTATCGATGGAAAGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCA 29753 >seq2416 Length=15437 Score = 143 bits (158), Expect = 5e-29 Identities = 212/298 (71%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| |||| ||||||||| ||||| || ||||| |||||| | || || ||| ||||| Sbjct 2633 GAGGCCCGCTTCTTCTACGGTTTCCAAATCGCCATCGAGAACATCCATTCGGAGATGTAC 2574 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||||| || || ||||||| || |||||| || |||||||| || Sbjct 2573 TCGAAACTCATCGCGACATACATCCGCGACGAGAAGGAGCGTCACACACTGTTCAACGCA 2514 Query 42621 ATG---GAGA-CGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA 42676 || ||| ||| | ||||||||||||||| |||||||| || || ||||| Sbjct 2513 ATCTTCGAGTTCGAG----TTCATCAAGAAGAAGGCCGACTGGGCTCTTAAATGGATTTC 2458 Query 42677 GAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTT 42736 | | | || |||||| |||||| ||| | || ||| ||||||| ||||||||||| Sbjct 2457 GGATAAGAAGGCGTCGTTCGCCGAGAGACTGATTGCTTTTGCCGCCGTTGAGGGCATCTT 2398 Query 42737 CTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGA 42794 |||| || | |||||||||||||| ||| | ||| || | | |||||| ||| Sbjct 2397 CTTCAGTGGATCGTTCGCCTCCATCTTTTGGTTGAAGAAGCGCGGATTGATGCCAGGA 2340 >seq126 Length=90294 Score = 98.7 bits (108), Expect = 2e-15 Identities = 178/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 244916 TACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGC-CGGGCA 244974 || || ||||||||||| |||||| || || || || |||||| ||| ||||| Sbjct 11073 TAAAGAGCCTCGAACTCCTCTCCCCAGCAGTCATCAAGTCCTGGGCAC-TCGCATGGGCA 11131 Query 244975 CATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAG 245034 ||| | ||| || | | | || ||| | || |||||| || || || |||||||| Sbjct 11132 CATCAACGACCAATCCTGGTCCTTCTCGACACGCTTCATGAAAAGATCTGGAATCCAGAG 11191 Query 245035 GGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAA 245094 ||| |||| || || | | | || ||| || | || |||||||| | || | Sbjct 11192 AGCCAGGAACAGATCACGAGCACGCTCCTCTTCTGGTCCGGTGTTCTTGCGAAGGGAAAC 11251 Query 245095 AAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTT 245154 || || || || ||| ||||||| ||||| | ||| | |||| ||| || || ||||| Sbjct 11252 GAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAAATGGCGAAGGCTCCTGGGCGCTT 11311 Query 245155 GTTGCCTCCCTGGTCCAC 245172 ||||||||| || || || Sbjct 11312 GTTGCCTCCTTGATCGAC 11329 Score = 95.1 bits (104), Expect = 2e-14 Identities = 334/515 (65%), Gaps = 19/515 (4%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 |||||||| || ||||| || | |||||| || || || || ||||||| || Sbjct 10253 CCCCACATATCGAACTGAAGTTGTCCCTTGGAAACTGGAGATCCTTCATAGGTCGAATAT 10312 Query 244358 GGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCG 244417 || || || | | |||| || || || | || | || ||||||||||| |||||| Sbjct 10313 GGTCCATCTCTTTCAGCCAACTCGCAACTAGCCTCCAAAGCAGCGTAGTAGATTGTCTCG 10372 Query 244418 AAGATCATCTTGTTCATGTCGCGGGCCTTGC-CGCAGGTGAAGGGGATGCCCATCATCAT 244476 ||||| ||||||||| || | || ||||| | ||||||| || | ||||| ||| Sbjct 10373 AAGATTCTCTTGTTCAAATCTCTGG-CTTGCGGGGAGGTGAATGGATAACGCATCAGCAT 10431 Query 244477 GAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCG 244536 |||| || || ||||| ||||| || | || || || | || ||| |||| ||| Sbjct 10432 GAAGCAATCAGCGAGTCCTTGCACACCAAGACCAATTGGACGATGACGCATGTTAGAGTT 10491 Query 244537 CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGAT 244596 || || || || || ||||| | ||||| | |||||| | || || || Sbjct 10492 GCGAGCCTCCTCAACTGGATAGTAGTTGACATCGATGATCTTGTTCAAATTCTTCGTTAT 10551 Query 244597 CATGCGGACGACGTCGGCCAGC-AGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGG 244655 | || || || ||| | |||| || ||| || || || | | Sbjct 10552 GACCTTTGTCACCTCAGCGAGCTTGACGAAA-TCAAACT--------TCTTC-TCGTTAG 10601 Query 244656 TGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCG 244715 ||| | | || ||| | |||| | ||| || ||||| || || | ||| || | Sbjct 10602 TGA-CGTAAC-----GGTTCAAAGCGATGGAGGCGAGATTGCAAACAGCGATCTCATCTG 10655 Query 244716 AGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCT 244775 | ||||| || || || ||||| ||||| |||||||||||| || |||| || Sbjct 10656 GAGCAGAGTACTCGATGATTTCCGTGCAAAGGTTGGAGCACTTGATGGTTCCGAGGTTCT 10715 Query 244776 GGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 | ||||| |||||| ||| ||| ||||||||| Sbjct 10716 GCTGATTTGACTTGCGATTGGCGGCATCCTTGTAG 10750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944159055493360