Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq10611 286 9e-73 seq7245 192 1e-44 >seq10611 Length=853 Score = 286 bits (316), Expect = 9e-73 Identities = 391/558 (70%), Gaps = 23/558 (4%) Strand=Plus/Minus Query 26203 aaaaaaaGGGTTCATCGAGGAATTCCGGGGAACGCGGCGCGGATCTTGAGGAAGAAGTAT 26262 ||||||| ||||||||| |||| |||||||| || |||||||| || ||||||||||| Sbjct 554 AAAAAAAAGGTTCATCGCTGAATACCGGGGAAGGCTGCGCGGATTTTCAGGAAGAAGTAC 495 Query 26263 TCCTCGTCGCGGTACCCGTAAGCCCGACGTTTGATGACCTTGATGGTGTTGTTGATGCCT 26322 |||| |||||||||||||| || || |||||||||||||||||||||||||| |||||| Sbjct 494 TCCTGATCGCGGTACCCGTAGGCGCGCCGTTTGATGACCTTGATGGTGTTGTTAATGCCT 435 Query 26323 TCGACGACGCTGGTGTTGAGCGGGTGGCGGCAGCGGGCCAGAATTCCATGCCAGTAGCCC 26382 ||||||| |||||||||||| |||| || ||||||| ||| ||||||||| |||| || Sbjct 434 TCGACGATGCTGGTGTTGAGGCGGTGCCGACAGCGGGACAGGATTCCATGCAGGTAGGCC 375 Query 26383 TCCAGGCGCTGG--GCGAACAGTTGCAAAGCGGCGATCCCGCTTTGCC--GAGCCTGCTC 26438 | || ||| ||||| | || || ||||| |||| |||| | |||||||| Sbjct 374 TTGAG--CTTGGTCGCGAAGTGGGCCAGTGCCGCGATGCCGC--TGCCTTGGGCCTGCTC 319 Query 26439 AAACCATTGTTCCCAGGCCTTTTGCGCCCAGGCCGGTCTGCGGTAAAACCAGAGCCGTTT 26498 | ||| || |||||||| || ||||||| || |||||| ||||| || || || Sbjct 318 CAGCCAATGGTCCCAGGCTTTCCTGGCCCAGGATGGATGGCGGTAGAACCACAGTCGCTT 259 Query 26499 CAACTCGTCGCGCAGCACGTAGACGCATAACAGCGACTGATTGGCGG------------- 26545 | ||| ||| Sbjct 258 GAGCTCATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 199 Query 26546 --CCAGCAGCTCCTTCAGGTGCACGGCCTGCTCTGGCTTCAGATTGTGGCGCTTGCGTAG 26603 ||||||| || | || | ||| | ||| | | | ||| || | ||| ||||| || Sbjct 198 NTCCAGCAGTTCGTCCAACTTCACTGACTGGTGCCGATCCAGGTTCTCGCGATTGCGCAG 139 Query 26604 CAACAGCCACCGGCTGGACTTCAGAACCTTCCGGGCCGGCTTGTCATGCCGGAGTTGATT 26663 || |||||| || ||||| || | ||| | ||||| |||||||| || || || || || Sbjct 138 CAGCAGCCAGCGACTGGATTTGATGACCCTGCGGGCGGGCTTGTCGTGGCGCAGCTGGTT 79 Query 26664 GGCCTGATCCACCCGCACCCGGTCGATCACCTCACGCCCATACTTGGCCACGACGTGGAA 26723 |||||| || || |||||||| |||||||| || || || || ||||| ||||| ||||| Sbjct 78 GGCCTGGTCGACGCGCACCCGATCGATCACTTCGCGGCCGTATTTGGCTACGACATGGAA 19 Query 26724 CAAGTCGTAGACCACCTC 26741 || ||||||||| ||||| Sbjct 18 CAGGTCGTAGACGACCTC 1 >seq7245 Length=3005 Score = 192 bits (212), Expect = 1e-44 Identities = 323/463 (70%), Gaps = 7/463 (2%) Strand=Plus/Plus Query 26947 GCGAACTCGTCCATCGCCAGATAACGGATCGTCGACCAGTCCGGTTCGACCACACGCGCT 27006 || ||||| ||||||||||| ||| ||||| ||| ||||| || ||| | Sbjct 8 GCAAACTCATCCATCGCCAGGTAATGGATCCGGCTCCAATCCGGCTCCCGGACAGTCTGG 67 Query 27007 CGCAAGCGCATCTTGTCGATCGATTTGACCGTGTGCCAGCCCAGATCGTAGAACGCGGCC 27066 |||| || |||||| | || |||||||||||||||||||| | | | || ||| Sbjct 68 CGCAGCTGCGCCTTGTCCAGCGCCTTGACCGTGTGCCAGCCCAGCTGGAAAAAGCGGGCA 127 Query 27067 ACCGCCTGTACGCTGCTCGACTGCAGCAGCTTCTCGCAGGCCTCGGCGAATCGCTGCGTC 27126 || ||| | | |||| || ||||||| | || ||||| | || | | Sbjct 128 ACGGCCACGATGGTGCTGGAGGCAAGCAGCTGGCTGACCGCTTCGGCCA---GCCGAG-- 182 Query 27127 ACTCTCTGGTAGCGGCCCAGCCAGTCCAGCTTCTCCAGCCGAGGTCCGCCACAACGCTCG 27186 |||| ||||||||| ||||||||| ||||||||||||||| || ||||| || | ||| Sbjct 183 ACTCGCTGGTAGCGTCCCAGCCAGCTCAGCTTCTCCAGCCGCGGGCCGCCGCACTGGTCG 242 Query 27187 CACCACACGCGCCGGCGTGGGACGTGCAGCACCACCCGGTACTCGAAGAGCGGCAGATCA 27246 ||||| ||||| || || || || |||||| || || || | | ||||||||||| Sbjct 243 CACCAGACGCGACGACGCGGCACCACCAGCACAACACGAAACGCCAGCAGCGGCAGATCC 302 Query 27247 CGTACCCGCCGAGCTGTCGTCTCATGAATCTGCGAGCAACGCGTTCCGCATTGCTCACAG 27306 || ||||| || | || ||||| || | |||| ||| || || || ||| | ||| Sbjct 303 CGAACCCGGCGCACCGTGGTCTCGTGGACCTGCCTGCACCGGCGGCCACAGTGCCCGCAG 362 Query 27307 TGCATGA-CCTTGCTGACTGGCTTCAGATAGAGCGATAGCGTGCGGCTCTCGCCTTGCGG 27365 | ||| | || | |||| ||||| |||| || || | || ||||||||| |||| || Sbjct 363 TACATCACCCGGGATGAC-GGCTTGAGATGGATCGCGACTGTCCGGCTCTCGTCTTGAGG 421 Query 27366 CCACTCCACGCGCTCCAGGCGGTAACCCTTCCAGCAGCCCAGC 27408 |||||| | ||||| | ||||| || | ||||| || ||| Sbjct 422 CCACTCGATCCGCTCAACCCGGTAGCCTTCCCAGCCCCCAAGC 464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123887944415204