Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq9261 154 4e-33 seq4571 89.7 2e-13 seq6320 87.8 5e-13 >seq9261 Length=1438 Score = 154 bits (170), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 3/161 (2%) Strand=Plus/Plus Query 40994 GTGGCACGCGAGGTCTCGCGCAGCTCGGCGGCGGAGACGGTGAAGACGTCCTGCACCTCG 41053 ||||| ||||| ||| || | ||||||| ||| || ||||||||||||||||||||| Sbjct 1277 GTGGCCTGCGAGCGCTCACGGATCTCGGCGACGGGAACCGTGAAGACGTCCTGCACCTCG 1336 Query 41054 AGCGTCGG---CTCGCTGTCGGTCACGCCGATCCGCAGCACCGGATAGCCGCGCCCCTCG 41110 ||| ||| |||| ||||||||||||||| |||| |||||| ||| | || || ||| Sbjct 1337 AGCTTCGCGCCCTCGGAGTCGGTCACGCCGATGCGCATCACCGGGTAGTCCCGGCCTTCG 1396 Query 41111 CAGAGGCCGCGGAACTTCACGTCGTCCTCGCGGGGGACGGT 41151 ||||| || ||||||||||||||||||||||| || || || Sbjct 1397 CAGAGCCCACGGAACTTCACGTCGTCCTCGCGCGGAACCGT 1437 >seq4571 Length=7259 Score = 89.7 bits (98), Expect = 2e-13 Identities = 68/78 (87%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 42 TGGTGCCCCCGGATGGATTCGAACCATCGA-CACGCGAATTAGAAGGCCGCTGCTCTATC 100 |||||||||||| ||||||||||| ||| || | | |||||||||| |||||||||| Sbjct 2831 TGGTGCCCCCGGCAGGATTCGAACCTGCGACCAAGAG-ATTAGAAGGCTCCTGCTCTATC 2889 Query 101 CCCTGAGCTACGGAGGCG 118 |||||||||||||||||| Sbjct 2890 CCCTGAGCTACGGAGGCG 2907 >seq6320 Length=4127 Score = 87.8 bits (96), Expect = 5e-13 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Plus Query 19280 CCAGATGCGCCGCGAGGACGCGCAGGTCGGATCGGTGCTCCGCGCGATCACCCTGCCGAT 19339 || |||||||||||| || ||||||| ||||||||||||||| || |||| ||||| Sbjct 3937 CCGGATGCGCCGCGAAGATCCGCAGGTTAAGTCGGTGCTCCGCGCGGTCCCCCTCCCGAT 3996 Query 19340 CCGCTCGGCCCG-GTGGGAGATCGACCCGGCGGGCGCCCGCGACGAGGTGGT-GCAGCTC 19397 | || ||| ||||| ||||||| | | || |||| |||||| || ||| | | Sbjct 3997 -CATGCGTACCGAGTGGGCGATCGACGGGACCGGATGCCGCCCCGAGGTAGTCGCA-CAC 4054 Query 19398 ATCGCGGAGGACCTCGGCCTGCCCGTGAAGGGGAAGCCG 19436 ||||||| ||||| || ||||| | ||||| ||||| Sbjct 4055 ATCGCGGCCGACCTGGGACTGCCGATCAAGGGTCAGCCG 4093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148219534138814