Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1197 165 2e-35 seq1737 132 1e-25 seq433 93.3 1e-13 >seq1197 Length=26491 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || ||| || || || | || |||||||||| || || |||||||| || ||||| Sbjct 21624 ATCTCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTC 21683 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || | ||||||||||| || | || ||||| |||||||||| |||||| ||| Sbjct 21684 GGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGG 21743 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||| || || |||||||| || || ||||| || || | ||| | ||| Sbjct 21744 TGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTC 21803 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| |||||||||||||| |||||||| Sbjct 21804 AACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| || |||||||| ||||||| ||| || | ||| || || | |||| Sbjct 23180 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGTTGT 23239 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 ||||| |||||||| || | ||||||| |||||||||||| || || ||||| || Sbjct 23240 TTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 23299 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || |||||||| || | |||| | ||| |||||||| ||||| ||||| || ||| Sbjct 23300 GCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 23359 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||||||||| || |||||||| Sbjct 23360 AAAGTCTTGACAAAGATCTGCAT 23382 Score = 127 bits (140), Expect = 5e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| | ||| |||||||| | || || || ||||| || || || | Sbjct 23384 CCTCCTCTGAGGCGAAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGAC 23443 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||| || || | || ||||| |||||||| || | || ||| |||| Sbjct 23444 AAGGTGCGTCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGG 23503 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || ||||| || || || ||||| || || | |||| | ||| ||| Sbjct 23504 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACT 23563 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| || || || ||||||||||| ||||||||| Sbjct 23564 TCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || ||||||| |||||| ||| |||||||||||| || || ||||| || Sbjct 21993 TTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22052 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || ||||| || || | |||| | ||| |||||||| ||||| ||||| || ||| Sbjct 22053 GCCTTGACGTTCTCGATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 22112 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | |||||||||||| || |||||| Sbjct 22113 AAAGTCTTGACGAAGATTTGCATT 22136 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || | ||| ||| ||| |||||||| ||||||||||| || Sbjct 23743 TTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCTTG 23802 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || |||||||| || |||| ||| | ||| |||||||| ||||| ||||| || || Sbjct 23803 GCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAGTG 23862 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||||||| Sbjct 23863 AGGGTTTTCACGAAGATCTGCATT 23886 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATT 288387 || || |||||||||| ||||| ||| |||||| |||||||| || || ||||| Sbjct 23012 TTACCGGCGAAGATCAAGCGCTGCTGA---TCTGGGGGAATTCCTTCCTTGTCTTGGATC 23068 Query 288388 TTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCG 288447 || || |||||||| || || | || | ||| || ||||| ||||| ||||| || Sbjct 23069 TTGGCCTTCACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTCTTTCCA 23128 Query 288448 GTCAGAGTCTTGACGAATATCTGCAT 288473 |||| |||||||||||| |||||||| Sbjct 23129 GTCAAAGTCTTGACGAAGATCTGCAT 23154 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||||||||||| |||||||| || || || || ||||| || || | ||| | ||| Sbjct 22541 TGGGATTCCTTCCTTATCCTGAATCTTGGCCTTGACGTTCTCGATGGTGTCGGAAGCTTC 22600 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 22601 GACCTCGAGGGTGATAGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 22651 >seq1737 Length=20200 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| || ||||| || || | ||| ||||| |||||| Sbjct 9818 TCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAG 9877 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || || ||| ||| |||||||| || |||||||| || || || || || Sbjct 9878 ATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTC 9937 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || || ||||| || |||||||| || ||||||||||||||| Sbjct 9938 TCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACG 9997 Query 288463 AATATCTGCAT 288473 || || ||||| Sbjct 9998 AAGATTTGCAT 10008 >seq433 Length=49269 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 269227 GAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGA 269286 ||||| ||||||| |||||| ||||||| ||| ||||| || || |||| ||| Sbjct 29850 GAGAAGTTGTACAAAGTGAAGAACCCCTTCGACTTCATGGAGAACATCTCTATCGATGGA 29791 Query 269287 AAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 ||||| ||||||||||| ||||| ||| ||| || |||||||| ||||| ||| Sbjct 29790 AAGACCAACTTCTTCGAGAAGCGCGTCTCCGAGTACCAACGTCCGGGTGTCATG 29737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179423740331958