Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq765 118 4e-22 >seq765 Length=35493 Score = 118 bits (130), Expect = 4e-22 Identities = 343/518 (66%), Gaps = 20/518 (4%) Strand=Plus/Minus Query 42954 GGGCGAAGGTGTACGCGCCAGTGCTGGTCGAGAAGCAGAAGGCGGTCTGGCCACAAGCCC 43013 ||||||| |||| ||| |||||||| || | ||| || | ||||| | || | Sbjct 4612 GGGCGAACCAGTACCTGCCCGTGCTGGTGGATACCCAGCGCGCCATTTGGCCGGATGCGC 4553 Query 43014 CGGAGCCCTGGACCCTCGCCGGTCTGGTGGAGCAGGAAAGCTGTATCAGCCTGACGCACT 43073 || || | | ||| ||||| | | | ||| |||||||||| ||||||||||| ||| Sbjct 4552 CGACCCCTTCGTTCCTGGCCGGCCAGATCGAGAAGGAAAGCTGCATCAGCCTGACCCACA 4493 Query 43074 CCCGCTGCTGGAACCCGCGCAGTG---AGCTCAAGACCTCCCGTGAGTACGGTTTTGGCT 43130 | |||||||| || || || |||| ||| | ||||||| || ||| Sbjct 4492 GCAAGTGCTGGAATCC---CACTGCCCAGCTGCGCACCGCGCGTGAGTGGGGCAGGGGCC 4436 Query 43131 TCGGCCAGATCACCGTGGCCTATCGGGCGGACGGCTCCGCGCGCTTCAACAAGTTCGAGG 43190 | |||||| | ||| ||||| ||| ||||||| || | || ||| ||| || | Sbjct 4435 TAGGCCAGGTGACCACCGCCTACCGGCCGGACGGATCGGTTCGGTTCGACATCCAGGAAG 4376 Query 43191 AGCTGAGGGCGGCGC-ACGCCTCGCTGCGCGACTGGAC--TTGGGCGAACCGCTATGACC 43247 || || | | |||| | |||| ||||| | |||||| || ||| | | || | Sbjct 4375 AGTTG-CGCCAGCGCTATCCCTCCCTGCGTGGCTGGACCACTGAGCG--CTGGGCGGATC 4319 Query 43248 CGGGCTATCAGCTCACGGCCATCGTGGAAATGAATCTGGACCTGTGGCGGCGGCTCGCCT 43307 || | || ||| |||| |||||||| || ||| | || | | | | |||| Sbjct 4318 CGCGTTACCAGATCACCGCCATCGTCGAGATGGACAAGGCGATCTACCAG-----CGCCA 4264 Query 43308 CCGCCCCGGGCGCAACGGTCACGGACC-ACTGGGGCTTCGTCCTATCCAGCTACAACGGC 43366 ||| | | ||| |||| | ||||| ||| | ||| ||| || ||||||||||| Sbjct 4263 GCGCGGC-GCCGCCACGGACCGGGACCGACTCCAG-TTCACCCTGTCTGGCTACAACGGC 4206 Query 43367 GGGCTCGCGGGCGTCCTCCAGGACCGGCGGCTGTGCTCGAACACCCGCGGATGCGACCCG 43426 || | ||||| || |||||||| ||||||||| |||||| || |||||||| Sbjct 4205 GGCGAATCTGGCGTGCTGCAGGACCGCCGGCTGTGCAGCAACACCGCGGGCTGCGACCCC 4146 Query 43427 GCCCGTTGGTTTGAGCACGTAGAACGCACCAGCCTCAA 43464 ||| ||| || ||||| | ||||||||||| || Sbjct 4145 AGCCGCTGGGATGGCCACGTCGCGCGCACCAGCCTGAA 4108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187566002307250