Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq126 145 9e-30 seq330 102 1e-16 >seq126 Length=90294 Score = 145 bits (160), Expect = 9e-30 Identities = 353/530 (67%), Gaps = 5/530 (1%) Strand=Plus/Plus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 ||||||||| ||||| || || | ||| |||| ||||| ||| | ||| ||||| Sbjct 10255 CCACATATCGAACTGAAGTTGTCCCTTGGAAACTGGAGATCCTTCATAGGTCGAATATGG 10314 Query 114163 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 114222 || || || ||||| ||| | || ||||| | || |||| || |||||||| || Sbjct 10315 TCCATCTCTTTCAGCCAACTCGCAACTAGCCTCCAAAGCAGCGTAGTAGATTGTCTCGAA 10374 Query 114223 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAA 114281 || | |||| | |||| | ||| || | || ||| || || | Sbjct 10375 GATTCTCTTGTTCAAATCTCTGGCTTGCGGGGAGGTGAATG-GATAACGCATCAGCATGA 10433 Query 114282 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTC 114341 | ||| ||||| ||||| ||||| || |||||||| ||||| | ||| ||||| || | Sbjct 10434 AGCAATCAGCGAGTCCTTGCACACCAAGACCAATTGGACGATGACGCATGTTAGAGTTGC 10493 Query 114342 GAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAA 114401 |||| ||| || ||||| | || |||||| | | | || | ||| || || | | Sbjct 10494 GAGCCTCCTCAACTGGATAGTAGTTGACATCGATGATCTTGTTCAAATTCTTCGTTATGA 10553 Query 114402 CCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACT 114461 ||||||| | ||| ||||| || ||||||| || | |||| | | |||| || Sbjct 10554 CCTTTGTCACCTCAGCGAGCTTGACGAAATCAAA-CTTCT--TCTCGTTAGTGACGTAAC 10610 Query 114462 TAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTA 114521 | ||||| || || ||||| || |||| | ||||||| | ||| |||||| | Sbjct 10611 GGTTCAAAGCGATGGAGGCGAGATTGCAAACAGCGATCTCATCTGGAGCAGAGTACTCGA 10670 Query 114522 TAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 114581 | |||||||| || | || || | ||| ||||| || | ||||| ||||||||||| Sbjct 10671 TGATTTCCGTGCAAAGGTTGGAGCACTTGATGGTTCCGAGGTTCTGCTGATTTGACTTGC 10730 Query 114582 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || ||||||||||| ||||| || || ||||| ||||| Sbjct 10731 GATTGGCGGCATCCTTGTAGGTGATGTAAGGAAGACCAGTCTCGATTTGG 10780 >seq330 Length=57129 Score = 102 bits (112), Expect = 1e-16 Identities = 253/384 (66%), Gaps = 9/384 (2%) Strand=Plus/Minus Query 172582 GAGGGATGGCCAGAAGTAGTGGATCATATTCAGGATGAGACCCTTAATGTGTGAACCATC 172641 ||| || |||||||||| ||||| | ||| | | || ||||| ||||| |||||||| Sbjct 1852 GAGCGACGGCCAGAAGTGGTGGACGAAATTGATAACAAGTCCCTTGATGTGGGAACCATC 1793 Query 172642 GTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAG---CTCGGAAACATC--- 172695 | |||| ||| | ||| | ||| | | || || || || || | || |||| Sbjct 1792 TTGATCCTGATCAGCCATGACCATCATCTTTCCGTAACGGAGAGTCTTGAAATCATCATC 1733 Query 172696 ---TTGATACTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTG 172752 || |||| ||| | |||||| || | |||||| | | | | |||| ||| Sbjct 1732 TGTTTCGTACTTCTTTTTGTATTGAAGTCCGAGGATCTTGATCATAGCGTTGATCTCAGC 1673 Query 172753 GTTTGATGTGAGTTGCGCCACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGG 172812 ||| | | |||| || | || || ||||| | ||| ||||| || || Sbjct 1672 ATTTTCAGCAACTTGCTTCATGTTTCCGTCACGAACATTCAAAAGCTTTCCACGAAGTGG 1613 Query 172813 GAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGC 172872 ||| ||||| || | ||||||||||| ||||| ||||| | ||| || | ||||| || Sbjct 1612 GAAGACACCATACTTGTCACGACCAACAACAGATAGACCGGAAACGGCCAAAGTCTTGGC 1553 Query 172873 GGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTT 172932 ||||| ||||| || | |||||| || || | | || | || || || | ||| Sbjct 1552 AGAATCTCCCTCGGTAAGGATGAGTGTGCATTGTTGGGAGTTCTTGGTTCCTGCATCGTT 1493 Query 172933 CGCATCGTCCAACTTGGGAATACC 172956 ||||| || | ||| || ||||| Sbjct 1492 TGCATCTTCAAGCTTCGGGATACC 1469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597239647333880