Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1197 111 2e-19 seq1737 87.8 2e-12 >seq1197 Length=26491 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||| |||||||| || | || ||| || | || || |||||| Sbjct 22161 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCATCCTCGAGCTGC 22220 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | ||||| | |||||| || || ||||||||||| || ||||| || || Sbjct 22221 TTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTG 22280 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || ||| | || ||| ||| || || || | ||| | |||||| ||||| Sbjct 22281 GCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGTCTTTCCGGTG 22340 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | || || ||||| || |||||| Sbjct 22341 AGGGTCTTCACGAAGATCTGCATT 22364 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | ||||| || || || ||||||||||| | | |||||| | || Sbjct 23398 AAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATC 23457 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| ||||| | ||||| | ||||| || || || |||||||| || || Sbjct 23458 CTCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTC 23517 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| || ||| | ||||| || || ||||| | || | ||| Sbjct 23518 TTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGT 23577 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || | || || ||||| || |||||| Sbjct 23578 CTTTCCAGTGAGGGTCTTGACGAAGATCTGCATT 23611 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || || ||||| || | || || | | || || |||||||| ||| Sbjct 22683 GTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGCTGCTTTCCG 22742 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| | || ||||| || ||||||||||| || || || || || ||| Sbjct 22743 GCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTG 22802 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| || || ||||| | ||| | ||||| || || | |||| Sbjct 22803 ACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTTTCCAGTGAGAGTT 22862 Query 64427 TTTACGAAAATTTGCATT 64444 || |||||||| |||||| Sbjct 22863 TTCACGAAAATCTGCATT 22880 >seq1737 Length=20200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | || || || | || ||||| ||| Sbjct 9806 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCAAGTTGC 9865 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | || ||||| || || ||||||||||| || || || || || Sbjct 9866 TTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTA 9925 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||||| || || || || | || | ||||| || ||| Sbjct 9926 GCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTACCCGTC 9985 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || ||||| |||||||| Sbjct 9986 AGAGTCTTGACGAAGATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499549486508840