Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq126 132 5e-26 >seq126 Length=90294 Score = 132 bits (146), Expect = 5e-26 Identities = 397/606 (66%), Gaps = 14/606 (2%) Strand=Plus/Minus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||||| ||||| || ||||| || |||||||||||||| | ||| || Sbjct 11752 TACTTTGGATTCAAGACCCTGGAACGCTCTTACCTCCTCAAGATTAACA--AGGAAATCG 11695 Query 93784 --GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGC 93841 || || || || ||| |||||||||||||||||||||| || ||||| ||||||| | Sbjct 11694 TTGAACGGCCACAACAGATGCTGATGCGCGTCGCCATCGGAATCCACGGAAACGACATCC 11635 Query 93842 CGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATA----CCATGGCCACC 93897 | | | | | | || ||| || | | || | ||||| | | Sbjct 11634 AGGCCGCCATCGAGACGTACAATCTGATGTCTGA---GCGCTACATGACCCATG-CTTCG 11579 Query 93898 CCGACCCTGTTCAACGCGGGGACCC-CGGTGCCACAGATGTCTTCGTGTTTCCTGATGAC 93956 || || || |||||| | || ||| | || |||||||||||||| || ||| || |||| Sbjct 11578 CCTACTCTTTTCAACTCTGGAACCTGCCGT-CCACAGATGTCTTCCTGCTTCTTGTTGAC 11520 Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016 | | | || || || |||||| | ||||| || ||| | || || ||||| Sbjct 11519 AATGAGCGAGGATTCGATTCTCGGAATCTACGACACTCTGAAGCAATGCGCCCTTATCTC 11460 Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACAT 94076 || || || |||||||| ||| || || | | ||||||| || || ||| Sbjct 11459 TAAGAGTGCCGGTGGAATCGGACTCAACGTGCATAAGATCCGTGCCACTGGATCGACCAT 11400 Query 94077 CCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGC 94136 | || ||||| || || ||||| || ||| | || ||||| || || | ||||||| | Sbjct 11399 CGCTGGAACCAACGGAACATCCAATGGACTCATACCGATGCTTCGTGTTTACAACAACAC 11340 Query 94137 GGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGA 94196 || || || || || || || || | | | || | ||||| | || ||||| Sbjct 11339 CGCCCGTTATGTCGATCAAGGAGGCAACAAGCGCCCAGGAGCCTTCGCCATTTACCTCGA 11280 Query 94197 GCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCT 94256 ||| |||||||| || || | ||| | ||| || |||||| ||| || Sbjct 11279 GCCATGGCACGCCGATGTTTTCGAGTTCGTTTCCCTTCGCAAGAACACCGGACCAGAAGA 11220 Query 94257 GGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGT 94316 |||| | || | || || ||| ||||||||| | ||||| ||||| ||||| || || Sbjct 11219 GGAGCGTGCTCGTGATCTGTTCCTGGCTCTCTGGATTCCAGATCTTTTCATGAAGCGTGT 11160 Query 94317 CGAGAA 94322 |||||| Sbjct 11159 CGAGAA 11154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494628825365560