Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1737 96.9 3e-15 seq1197 89.7 5e-13 >seq1737 Length=20200 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | |||||||| || |||||||||||| Sbjct 9782 CCTCCACGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 9841 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| ||||| || |||| |||| | || || || || || || Sbjct 9842 AGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGA 9901 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | ||| |||| | ||| ||| Sbjct 9902 ATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACC 9961 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| || | ||| ||||| |||||||| || || || || |||||| || Sbjct 9962 TCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTGCATGACT 10012 >seq1197 Length=26491 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | | ||||||||||| |||||||||||| | Sbjct 21628 CCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGAC 21687 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | |||| | |||||| || || || || Sbjct 21688 AAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGG 21747 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| |||||| || | | || | ||| || | | || ||| Sbjct 21748 ATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACC 21807 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || || || ||||| || || || |||||||| Sbjct 21808 TCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | || ||||| || || ||||||||| Sbjct 23156 CCTCCACGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAG 23215 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||||||||||| |||| |||| || | |||||| || || || Sbjct 23216 AGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGG 23275 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | ||| | ||| |||| | || || Sbjct 23276 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACT 23335 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || || ||||||| ||| || ||||| |||||||| Sbjct 23336 TCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 23382 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | ||| | ||| | | |||||||| || ||||||||||| Sbjct 24117 CCTCCTCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24176 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||||| || || |||| |||| || | || ||||| || || Sbjct 24177 AGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 24236 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| |||||| || | | || | |||||| | | ||||||| Sbjct 24237 ATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACC 24296 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | |||||| ||||||| ||||| || || || |||||| Sbjct 24297 TCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATG 24344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496167731743920