Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq9433 120 9e-23 >seq9433 Length=1355 Score = 120 bits (132), Expect = 9e-23 Identities = 202/289 (70%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 41121 GTCGTGAACCAGTTGTTCTCCGAACTTCAATCGATCTTCCCGGCCTGGCGGCAGGCGTGG 41180 |||||||| | ||||| ||| || | || |||||||| |||||| |||||| ||| Sbjct 999 GTCGTGAATTCGCTGTTCAACGAGCTGAAGTCCATCTTCCCCGCCTGGAAGCAGGCCTGG 1058 Query 41181 CCAACCGCTGAGGCGATTGCCAAG---GCCAAACGTACTTGGATCAAGGCGTTCATGGAT 41237 || | |||||| | ||| ||||| || | |||||||||| | |||| Sbjct 1059 CCGGATGACGAGGCGCTG---AAGCGCGCCAAGCGCTCCTGGATCAAGGGCCTGATGGCC 1115 Query 41238 GCAGGTCTGAACAGTCTGGAACAGATCCGCTATGGCATTCAGCAATGCCGGGCCTCTGGC 41297 || || | || |||||||||||||||| ||| | | ||||||||| ||| Sbjct 1116 GCCGGCATTCACTCGCTGGAACAGATCCGCTTCGGCCTGATGACCTGCCGGGCCAGCGGC 1175 Query 41298 GGCGACTTCGCGCCCAGCGTCGGCAATTTCATCAAGTGGTGCAACCCGAGTCCTGAGCAT 41357 |||||||| |||||||||||||| ||| | |||||||| | || || | ||||| Sbjct 1176 CAGGACTTCGCACCCAGCGTCGGCAAGTTCGTGGAGTGGTGCCAGCCCAGCGCCGAGCAA 1235 Query 41358 CTTGGGCTGCCCAGCTTA--GAGAAGGCCTATCTGGAGGCTGCCCGGAA 41404 || || ||||| || | |||||||||| | |||||| ||||| || Sbjct 1236 CTCGGCCTGCC--GCCGACCGAGAAGGCCTTCCAGGAGGCCGCCCGCAA 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149841640120388