Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1197 113 4e-20 >seq1197 Length=26491 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| ||||| || ||||| ||| || ||||| || || ||||| |||||| Sbjct 21658 GTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCA 21717 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| ||||||||||| || || || || |||||||| |||||| |||| Sbjct 21718 GCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTG 21777 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| || | || || |||| ||| | || || ||||| ||||| Sbjct 21778 ACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTC 21837 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 21838 TTGACGAAGATCTGCAT 21854 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || || || || || |||||||| ||| | || | ||| || Sbjct 22670 CACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTC 22729 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| ||| |||| | || || || || || || || || ||||||||| Sbjct 22730 GAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTG 22789 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| | ||||| |||||| | | ||||||||| | || | || || Sbjct 22790 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTT 22849 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||| || ||||||||||| Sbjct 22850 TCCAGTGAGAGTTTTCACGAAAATCTGCAT 22879 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| ||||| ||| |||| | || ||||| || || || || |||||||| Sbjct 24188 ATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTT 24247 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 ||| |||||| ||||| | |||| |||||| | | ||| || || | ||| | Sbjct 24248 GTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGAT 24307 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||| || |||| ||||| || || || |||||| Sbjct 24308 CGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCATG 24344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475410092278640