Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1197 91.5 1e-13 >seq1197 Length=26491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| |||||||| || ||| || ||| | ||| || | |||| Sbjct 23180 TGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGTTGT 23239 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | || || || || || || || ||||| || ||||| || || Sbjct 23240 TTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTG 23299 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||| ||||| | ||||||||||| || | || || || || Sbjct 23300 GCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTC 23359 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| || ||||| Sbjct 23360 AAAGTCTTGACAAAGATCTGCAT 23382 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || | | || ||||| || || || ||||||||||| || || ||| Sbjct 21627 TCCTCCACGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGA 21686 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| || || | || ||||| ||| | ||||| || ||||| || || || Sbjct 21687 CAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGG 21746 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 || ||||| || ||||| ||||| |||| || | || | ||| || || | || | Sbjct 21747 GATTCCTTCCTTGTCTTGGATTTTAGCCTTGA-CGTTCTCGATGGTATCAGAGGCTTCAA 21805 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || | || || ||||| ||||| || || || || ||||| Sbjct 21806 CCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 21854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451916974739560