Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq126 156 5e-33 seq330 96.9 4e-15 seq11978 93.3 5e-14 seq433 89.7 6e-13 >seq126 Length=90294 Score = 156 bits (172), Expect = 5e-33 Identities = 338/501 (67%), Gaps = 5/501 (1%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 |||||||||| ||||| || || | ||| |||| ||||| ||| | ||| ||||| Sbjct 10254 CCCACATATCGAACTGAAGTTGTCCCTTGGAAACTGGAGATCCTTCATAGGTCGAATATG 10313 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | || || || ||||| ||| | || ||||| | || |||| || |||||||| | Sbjct 10314 GTCCATCTCTTTCAGCCAACTCGCAACTAGCCTCCAAAGCAGCGTAGTAGATTGTCTCGA 10373 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATA 116241 | || | |||| | |||| | ||| || | || | ||| || || Sbjct 10374 AGATTCTCTTGTTCAAATCTCTGGCTTGCGGGGAGGTGAATG-GATAACGCATCAGCATG 10432 Query 116242 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 116301 || ||| ||||| ||||| ||||| || |||||||| ||||| | ||| ||||| || Sbjct 10433 AAGCAATCAGCGAGTCCTTGCACACCAAGACCAATTGGACGATGACGCATGTTAGAGTTG 10492 Query 116302 CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACA 116361 ||||| ||| || ||||| | || |||||| | | | || | ||| || || | Sbjct 10493 CGAGCCTCCTCAACTGGATAGTAGTTGACATCGATGATCTTGTTCAAATTCTTCGTTATG 10552 Query 116362 ACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATAC 116421 |||||||| | ||| ||||| || ||||||| || | |||| | | |||| || Sbjct 10553 ACCTTTGTCACCTCAGCGAGCTTGACGAAATCAAA-CTTCT--TCTCGTTAGTGACGTAA 10609 Query 116422 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 116481 | ||||| || || ||||| || |||| | ||||||| | ||| |||||| Sbjct 10610 CGGTTCAAAGCGATGGAGGCGAGATTGCAAACAGCGATCTCATCTGGAGCAGAGTACTCG 10669 Query 116482 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 116541 || |||||||| || | || || | ||| ||||| || | ||||| ||||||||||| Sbjct 10670 ATGATTTCCGTGCAAAGGTTGGAGCACTTGATGGTTCCGAGGTTCTGCTGATTTGACTTG 10729 Query 116542 GTGTTACACGCATCCTTGTAG 116562 || |||||||||||| Sbjct 10730 CGATTGGCGGCATCCTTGTAG 10750 >seq330 Length=57129 Score = 96.9 bits (106), Expect = 4e-15 Identities = 252/384 (66%), Gaps = 9/384 (2%) Strand=Plus/Minus Query 176602 GAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATC 176661 ||| || |||||||||| ||||| | ||||| | || ||||| ||||| |||||||| Sbjct 1852 GAGCGACGGCCAGAAGTGGTGGACGAAATTGATAACAAGTCCCTTGATGTGGGAACCATC 1793 Query 176662 GTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG---CTCGGAAACATC--- 176715 | |||| ||| | ||| | ||| | | || || || || || | || |||| Sbjct 1792 TTGATCCTGATCAGCCATGACCATCATCTTTCCGTAACGGAGAGTCTTGAAATCATCATC 1733 Query 176716 ---TTGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTG 176772 || || | ||| | |||||| || | ||||| | | | | |||| ||| Sbjct 1732 TGTTTCGTACTTCTTTTTGTATTGAAGTCCGAGGATCTTGATCATAGCGTTGATCTCAGC 1673 Query 176773 GTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGG 176832 ||| | | |||| || |||| || ||||| | ||| || || || || Sbjct 1672 ATTTTCAGCAACTTGCTTCATGTTTCCGTCACGAACATTCAAAAGCTTTCCACGAAGTGG 1613 Query 176833 GAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGC 176892 ||| ||||| || | ||||||||||| ||||| ||||| | ||| || | ||||| || Sbjct 1612 GAAGACACCATACTTGTCACGACCAACAACAGATAGACCGGAAACGGCCAAAGTCTTGGC 1553 Query 176893 GGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTT 176952 ||||| ||||| || | |||||| || || | | || | || || || | ||| Sbjct 1552 AGAATCTCCCTCGGTAAGGATGAGTGTGCATTGTTGGGAGTTCTTGGTTCCTGCATCGTT 1493 Query 176953 CGCATCGTCCAACTTGGGAATACC 176976 ||||| || | ||| || ||||| Sbjct 1492 TGCATCTTCAAGCTTCGGGATACC 1469 >seq11978 Length=497 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 127244 CGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAATGGG 127303 ||||||||||||||||| ||||| ||||||| ||| |||||||| || || || ||| Sbjct 255 CGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAAGGGG 314 Query 127304 TTCTTTGAGTTCCA-AATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGACGTA 127362 ||||| || | || | | ||| ||||| || ||| | | |||| | ||| | Sbjct 315 TTCTTCACTTTGTACAACTTCTCGCATCCCAA-CTCGGCGAGCAAATGATCGGCGACAAA 373 Query 127363 CTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT-TACATGGGAGCGCGT 127421 ||||||||||| |||||| | | |||| || ||||| | || ||| ||| || || | Sbjct 374 CTCAATGTACTGGGACATCATGCGACAGTTTATTCCGATTATGTCTAC-TGGAAGAGCCT 432 Query 127422 CCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCG 127458 | || |||| | | |||||| | ||||| || || Sbjct 433 CGGTGAGGAACTCTTGTTCAATGGCGACAGCATCACG 469 >seq433 Length=49269 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 127240 GACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATAAAATCAAA 127299 ||| ||||||||||||||||| ||||| ||||||| ||| |||||||| || || || Sbjct 29764 GACGCGCTTCTCGAAGAAGTTGGTCTTTCCATCGATAGAGATGTTCTCCATGAAGTCGAA 29823 Query 127300 TGGGTTCTTTGAGTTCCA-AATTGTTGGCACCCCAATCTGTTTGAGGAGACGATCCGAGA 127358 |||||||| || | || | | ||| ||||| || || ||| |||| | || Sbjct 29824 GGGGTTCTTCACTTTGTACAACTTCTCGCATCCCAA-CTCGGCAAGCAGATGATCGGCGA 29882 Query 127359 CGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGAGCG 127418 | |||||||||||| |||||| | ||||||| ||||| | || ||| || | Sbjct 29883 CAAACTCAATGTACTGGGACATCAGGCGACAGTTCATTCCGATCATGTCGACTGGAAGAG 29942 Query 127419 CGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || | |||| | | ||||||| | || || || || | ||| Sbjct 29943 CCTCGGTAAGGAACTCTTGCTCAATGGCGACGGCATCACGAATGAT 29988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613390165832760