Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq126 152 8e-32 >seq126 Length=90294 Score = 152 bits (168), Expect = 8e-32 Identities = 336/499 (67%), Gaps = 10/499 (2%) Strand=Plus/Plus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 || |||||| || ||||| |||| ||| || ||||| ||| || | | || ||||||||| Sbjct 9657 CGCCTTGTCGACAGTGAATTGAACGGCATTGACGGCTGGCTTGGTACGCAAATAGTACAT 9716 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACA-GTTTGCTCACGT 203954 || ||||| || ||||||| ||| ||||| | |||||| || | | | ||| | | Sbjct 9717 TCCAGTCTTGAGTCCCTTCTTCCATCCGTAGAAGTGCATCGATGTGATGGCTGCGTAGCT 9776 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 ||| | | ||||||||||||| || || || ||| || ||| | | | ||||| | Sbjct 9777 TGGCTTAG-CCATGTGAATGTTGAGCGATTGAGATTGATCAATGTATGCTCCACGATCGG 9835 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGG 204074 ||||||| | ||| || |||||| || || |||||||| || | | | || Sbjct 9836 CGGCCATCTCGATGATCTCCTTCTGAGAGATTTCCCACACGGTGAGATAGAGTGCCTTGA 9895 Query 204075 TGTGTTGAGGCACATCTTCC---CACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC 204130 ||| | || | |||| | || || || || ||||||| ||| || |||| Sbjct 9896 TGTCATCTGGGA----TTCCGGGAATGTTTTGAATGGATCCGTTGTTGGCGATGAGTCGA 9951 Query 204131 ATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTG 204190 || || |||| || ||||| || | | || ||| | || ||| || || Sbjct 9952 TTCTTCATCTCATCAGTCCACAATCCTCTCTCAACCAAATCCTTGAGCATGTGTGGATTA 10011 Query 204191 ATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCG 204250 | ||||| ||||||||||| ||||| | || | | | | ||| |||| |||| || Sbjct 10012 ACAATCTGGAAGTCTCCGGAAAGCACACGACGTGAGTAAATGTTTGAGGTGTATGGCTCA 10071 Query 204251 AACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGC 204310 | || |||||||| |||| || || |||||| || || ||||| ||||||| || Sbjct 10072 ATCGATTCGTTGTTTCCGAGGATTTGCGCGGTGGAAGCAGTTGGCATTGGAGCCATCAGA 10131 Query 204311 AGGGAGTTGCGCACACCGT 204329 || |||||| || |||| Sbjct 10132 AGACTGTTGCGAACTCCGT 10150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795003514206160