Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1197 163 7e-35 seq1737 123 6e-23 >seq1197 Length=26491 Score = 163 bits (180), Expect = 7e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| || ||||| |||| |||||||| | | ||| Sbjct 22659 CGAAGGCGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTT 22718 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || ||||||||||||||||||||||| | || ||||| || ||||||| Sbjct 22719 CTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGTTGGTCTGGTGGAATTCCT 22778 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || ||||| |||||| | | || || ||||| Sbjct 22779 TCCTTGTCCTGAATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGCCTCGACTTCCAAA 22838 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||||||||| ||||| || Sbjct 22839 GTGATAGTCTTTCCAGTGAGAGTTTTCACGAAAATCTG 22876 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||||||||||||||| |||| |||||| |||| ||| || | |||||| Sbjct 23399 AGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGACAAGGTGCGTCCATCC 23458 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | ||||| || || |||||||| || Sbjct 23459 TCAAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCT 23518 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | ||| || || | ||||| ||| Sbjct 23519 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTC 23578 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 23579 TTTCCAGTGAGGGTCTTGACGAAGATCTG 23607 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||||||||||||||| |||| ||||||||| | | ||| |||||||| Sbjct 24132 AGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTTCTTCCATCC 24191 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | |||||||| || ||||| || || Sbjct 24192 TCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 24251 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| |||| |||||| | | || || |||| |||||||| Sbjct 24252 TGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACCTCCAGGGTGATCGTT 24311 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || || ||||| Sbjct 24312 TTTCCAGTCAACGTTTTGACGAAGATTTG 24340 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||| | | || | |||||| Sbjct 22152 AGAACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCATCC 22211 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | |||||| || || ||||||||| || Sbjct 22212 TCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCT 22271 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | ||| || || | ||||| ||| Sbjct 22272 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGTC 22331 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 22332 TTTCCGGTGAGGGTCTTCACGAAGATCTG 22360 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || || || |||||||||||||||| ||||||||| | ||| || Sbjct 21634 CGAAGACGGAGAACGAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCGGACAAGGTG 21693 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| || || ||||||||||| |||||||| | ||||||||| || || |||||| Sbjct 21694 CGTCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGTGGGATTCCT 21753 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || ||| ||| |||| ||| || | | ||| || || | Sbjct 21754 TCCTTGTCTTGGATTTTAGCCTTGACGTTCTCGATGGTATCAGAGGCTTCAACCTCGAGG 21813 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || |||||||| || || || || || Sbjct 21814 GTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATCTG 21851 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| ||||| || ||||| |||| |||||||| | | ||| Sbjct 23162 CGAAGACGGAGAACCAAGTGAAGAGTGGATTCCTTCTGGATATTGTAGTCGGAGAGAGTT 23221 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||| || || || |||||||||||||| || | ||| || || || |||||| Sbjct 23222 CTTCCATCCTCGAGTTGTTTTCCGGCGAAGATAAGTCTCTGTTGATCTGGTGGGATTCCT 23281 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| ||| | ||| || | | ||| || || | Sbjct 23282 TCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATGGTATCGGAGGCTTCGACTTCGAGG 23341 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | ||| || ||||| || || Sbjct 23342 GTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTG 23379 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| |||||||||||||||||| | || |||||| | || ||| | ||||||||| Sbjct 23489 AAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACAACA 23430 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTT 201018 ||||||| ||||| ||||| || || ||| Sbjct 23429 TCCAGAAGGAGTCGACTCTCCATCTCGTT 23401 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 199485 GCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCT 199544 |||| |||||||||||||| | |||||| || || ||||||||| ||||| |||| Sbjct 23741 GCTTACCGGCGAAGATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTATCCTGGATCT 23800 Query 199545 TTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | ||||||| || | || |||| | ||| || || | ||||| ||||| || | Sbjct 23801 TGGCCTTCACGTTCTCAATAGTATCTGAAGCTTCGACTTCGAGTGTGATGGTCTTTCCAG 23860 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 |||| |||||||| || || || Sbjct 23861 TGAGGGTTTTCACGAAGATCTG 23882 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| |||||||||||||||||| | || |||||||| ||| | | || |||||| Sbjct 24222 AAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAACA 24163 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTT 201018 ||||||| ||||| ||||| || || ||| Sbjct 24162 TCCAGAAGGAGTCGACTCTCCATCTCGTT 24134 >seq1737 Length=20200 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || |||||||| |||| ||||||||| | | ||| Sbjct 9788 CGAAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTA 9847 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||||||||||||||| | || ||||| || || ||||||| Sbjct 9848 CGTCCATCCTCAAGTTGCTTTCCGGCGAAGATCAAGCGTTGCTGATCTGGTGGAATTCCT 9907 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||| || | | || || || | Sbjct 9908 TCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTATCGGAAGCCTCGACCTCGAGG 9967 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||||||||| ||||| || || || ||||| Sbjct 9968 GTAATCGTCTTACCCGTCAGAGTCTTGACGAAGATTTG 10005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178691083617487