Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1197 116 4e-21 seq1737 107 2e-18 >seq1197 Length=26491 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| | || ||||| | || |||||| ||||| |||||||| || Sbjct 24117 CCTCCTCTGAGACGGAGAACGAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24176 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || ||||||||||| |||||||| || | | |||||||| | || Sbjct 24177 AGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGG 24236 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||| || ||||| || | | ||||| | ||||| Sbjct 24237 ATTCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTCTCGATGGTGTCAGAAGCCTCCACC 24296 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| ||||| || |||| |||||| || ||||||||||| Sbjct 24297 TCCAGGGTGATCGTTTTTCCAGTCAACGTTTTGACGAAGATTTGCAT 24343 Score = 104 bits (114), Expect = 3e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| | ||||| |||| ||||||||||| || ||||| Sbjct 21663 CTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCCTCGAGCTGCTTTCCAGCGAA 21722 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||| ||| || ||||| | Sbjct 21723 GATCAAACGCTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTTAGCCTTGACGTT 21782 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||| || || | |||||||| || || || || || || || Sbjct 21783 CTCGATGGTATCAGAGGCTTCAACCTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGAC 21842 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 21843 GAAGATCTGCAT 21854 Score = 100 bits (110), Expect = 3e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || || || | || ||||||||||| |||||||| Sbjct 22172 CTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGTCCATCCTCGAGCTGCTTTCCGGCGAA 22231 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | |||||| || | || | | |||||||| |||||| ||||| | Sbjct 22232 GATGAGTCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 22291 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | ||| || || | |||||||| || || || || || || || Sbjct 22292 CTCAATGGTGTCAGAGGCTTCAACCTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTCAC 22351 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 22352 GAAGATCTGCATT 22364 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| ||||| | | || ||||||||||| |||||||| Sbjct 22689 TCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGCTGCTTTCCGGCGAAG 22748 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | || ||||| | || | | ||||||||| ||||| ||||| | Sbjct 22749 ATGAGTCTTTGTTGGTCTGGTGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTGACATTT 22808 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || |||| ||||| || || || || || ||||| || Sbjct 22809 TCGATGGTGTCAGAAGCCTCGACTTCCAAAGTGATAGTCTTTCCAGTGAGAGTTTTCACG 22868 Query 46583 AAGATTTGCATT 46594 || || |||||| Sbjct 22869 AAAATCTGCATT 22880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| ||||| | | || ||||| || || |||||||| Sbjct 23192 TCCTTCTGGATATTGTAGTCGGAGAGAGTTCTTCCATCCTCGAGTTGTTTTCCGGCGAAG 23251 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||| || || | || | | |||||||| |||||| ||||| | Sbjct 23252 ATAAGTCTCTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTT 23311 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| | ||| || || | |||||||| || || |||| || || ||| Sbjct 23312 TCAATGGTATCGGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACA 23371 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 23372 AAGATCTGCAT 23382 >seq1737 Length=20200 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || | || || || ||||| |||||||| Sbjct 9817 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGTCCATCCTCAAGTTGCTTTCCGGCGAA 9876 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||| ||||| || | || | | ||||||||| |||||| ||||| | Sbjct 9877 GATCAAGCGTTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 9936 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || || | || || || || |||||||| || || || Sbjct 9937 CTCGATGGTATCGGAAGCCTCGACCTCGAGGGTAATCGTCTTACCCGTCAGAGTCTTGAC 9996 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 9997 GAAGATTTGCAT 10008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565130573709720