Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq433 129 6e-25 seq1197 122 9e-23 seq1737 102 8e-17 >seq433 Length=49269 Score = 129 bits (142), Expect = 6e-25 Identities = 213/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 132949 GTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAA 133008 ||||| || ||||| | ||||| || || | |||||| |||| ||||||| || Sbjct 30142 GTCAATCCTGGCATCAATCCGCGCTTCTTCAACCAAAAGATGGAGGCGAAAGATCCACTG 30201 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACG-TGGCTTCTTT 133067 ||||||| |||||||||||| |||||||| | ||| | |||| |||||| | |||||| Sbjct 30202 AAGAAGATGCCCTCGACGGCGGCGAAAGCAATCAGTCTCTCGGCGAACGACGCCTTCTTA 30261 Query 133068 GCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCA--CGGCATCGTTTCG 133125 | | ||||| || ||||| |||||||| | |||| | | || ||| | Sbjct 30262 TC-CGAAATCCATTTAAGAGCCCAGTCGGCCTTCTTCTTGATGAATTCGAACTCG--AAG 30318 Query 133126 ATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTC 133185 |||||||| |||| | | ||| | | || | ||| || |||||||| | Sbjct 30319 ATGGCGTTGAACAGTGTGTGACGCTCCTTCTCATCGCGGATGTATGTCTCGATGAGCTTT 30378 Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 || ||||| ||||| || | |||||| ||||||||||| || ||||| ||| | || ||| Sbjct 30379 GAGTACATCTCCGAATGGATGTTCTCGATGGCGATTTGGAAACCGTAGAAGAAGCGAGCC 30438 Query 133246 TCG 133248 ||| Sbjct 30439 TCG 30441 >seq1197 Length=26491 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || |||||||| | || || || ||| | Sbjct 22364 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTC 22305 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| ||||| || |||||||| | || | Sbjct 22304 TGACACCATTGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATC 22246 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| | ||||| | ||| || || ||||| || || | || |||||| |||||||| Sbjct 22245 AGCAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACA 22186 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || || ||||| || || | ||||| || Sbjct 22185 ACATCCAAAAGGAGTCCACCCTTCACTTGGTTCTCCGCCTCAGAGGAGG 22137 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || ||||||||| |||| || || ||| | Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||||||| ||||| || ||||| || | || || Sbjct 21794 GATACCATCGAGAACG-TCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCA 21736 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || ||||| || |||| |||||| | ||||||||| Sbjct 21735 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAA 21676 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| |||| || ||| | || || ||| Sbjct 21675 CATCCAAAAGGAGTCGACCCTTCATCTCGTTCTCCGT 21639 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| |||||| | || || ||||| |||||| | || || ||||| | Sbjct 24343 ATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCTTCT 24284 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| ||||| |||||||| || | ||||| Sbjct 24283 GACACCATCGAGAACG-TCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGACCA 24225 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | ||||| | ||| || || ||||| || || | | || || |||||||| Sbjct 24224 GCAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTACAA 24165 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || ||| | || || ||| | ||||| || Sbjct 24164 CATCCAGAAGGAGTCGACTCTCCATCTCGTTCTCCGTCTCAGAGGAGG 24117 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| |||| ||||| || | Sbjct 23611 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTC 23552 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | | | |||| | || | || |||| ||||| || ||||| || | || | Sbjct 23551 CGATACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATC 23493 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || | ||||| | ||| || || ||||| || || | |||||| | || |||| Sbjct 23492 AGCAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACA 23433 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || ||| | || || || | ||||| || Sbjct 23432 ACATCCAGAAGGAGTCGACTCTCCATCTCGTTCTTCGCCTCAGAGGAGG 23384 >seq1737 Length=20200 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || ||||| || || || ||| |||| |||||||| || Sbjct 10008 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACGATTACCCTCGAGGTCGAGGCTTCC 9949 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| ||||| || |||||||| | || || Sbjct 9948 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 9889 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || || || || || | || || ||| |||||||||| Sbjct 9888 CAACGCTTGATCTTCGCCGGAAAGCAACTTGAGGATGGACGTACTCTCTCCGACTACAAC 9829 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || ||||| || ||| Sbjct 9828 ATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGT 9793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500077385786240