Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq8705 150 7e-31 seq350 132 2e-25 seq1197 113 2e-19 seq1737 107 8e-18 seq237 95.1 5e-14 >seq8705 Length=1774 Score = 150 bits (166), Expect = 7e-31 Identities = 255/366 (70%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 451243 TCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATAT 451302 ||| |||||||| ||| | ||||| ||| || ||||| ||||| ||||| ||| | Sbjct 1496 TCCGGAAGAAATCTCAGCAATGGTACTTCAGAAGATGAAGGAAACTGCAGAGACATACCT 1437 Query 451303 TGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACG 451362 || | |||| | |||||||| |||||||| || || || ||||| || || | Sbjct 1436 GGGACATGCAGTCAAGGATGCAGTCATTACTGTACCTGCATACTTCAACGACAGTCAGAG 1377 Query 451363 GCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGA 451422 |||||||| |||||||||| |||||||| || || | ||||||| || ||||| Sbjct 1376 ACAAGCAACAAAAGATGCAGCCACGATTGCTGGATTGAACGCCATTCGAATCATCAATGA 1317 Query 451423 ACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA--GAAGaaaaa 451480 ||| || ||||||||||| || |||||| | ||| |||| | | || ||||| || Sbjct 1316 ACCAACTGCAGCTGCTCTTGCTTATGGA-TTGGA----CAAAGGGATCAGTGAAGAGAAG 1262 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 ||| | || | || ||| | || ||||| ||| ||| ||| | ||| | |||| Sbjct 1261 AATGTATTGATCTTCGATCTCGGAGGAGGTACTTTCGATGTTTCAATCCTTACCATTGCT 1202 Query 451541 GATGG---GGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGAT 451597 || || | || ||||| || |||| || ||||||||||| ||||| || ||| Sbjct 1201 GAAGGATCCATCTTCGAAGTCAAATCAACAGCGGGAGATACTCATCTCGGAGGAGAGGAT 1142 Query 451598 ATTGAT 451603 | ||| Sbjct 1141 TTCGAT 1136 Score = 132 bits (146), Expect = 2e-25 Identities = 343/512 (67%), Gaps = 13/512 (3%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGT-TC 452049 ||||| |||||||| ||||||| || ||||||||||||||||| | || | || || Sbjct 761 AATCCCGATGAAGCAGTTGCATTCGGAGCTGCAGTTCAAGCAGCCGTACTGTCCGGAGTC 702 Query 452050 AGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGT 452109 | | ||| ||| | | |||| |||| | || ||||| | || | ||||||| | Sbjct 701 A-AGGATCAAACAATCAAAGATGTTCTACTCGTTGATGTTGCTCCATTGAGTCTTGGAAT 643 Query 452110 TGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAA 452169 || ||||||||||| ||||||| ||| | ||| | ||| ||| ||||| | Sbjct 642 CGAGACAGCTGGTGGTGTGATGACCAATCTGATTGATCGAAACACTCGAATTCCAAC--A 585 Query 452170 AAAGAGTC--AAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGTG 452227 || | || ||||||| | ||| || || |||||||| || | |||||||| Sbjct 584 AAGGCATCGAAAACATTCACAACATATGCCGACAATCAACCAGGAGTTTCAATTCAAGTC 525 Query 452228 TTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATT-TACTCTTTC 452286 | |||||||||||||| ||||| || ||||| || || ||| ||| | | | Sbjct 524 TACGAAGGAGAACGTGCCATGACTCGTGATAACCATCGTCTCGGAACATTCGAATTGAGC 465 Query 452287 AAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGC 452346 | || || ||| ||| | ||| |||||| |||||| | || | || | ||||| Sbjct 464 GGA-ATCCCACCTGCTCCACGTGGAGTTCCTCAGATTGAAGTCACTTTCGACATCGATGC 406 Query 452347 AAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAA-ATCAGAAAAAATTA 452405 ||| || ||||| |||||| || | || || ||| ||||||| ||| | | ||| | Sbjct 405 AAACGGAATTCTGAATGTGTCAGCTGAGGATAAGTCAACTGGAAAGGTCA-ACAGAATCA 347 Query 452406 CAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAG 452465 | || | || || || || || || || ||||||||| |||||| | || | Sbjct 346 CGATCAAGAACGAGAAGGGACGATTGTCACAATCAGATATTGATCGAATGGTGAACGAGG 287 Query 452466 CAGAAAAATT---CAAGGATGATGATGAACAA 452494 | | |||| ||||| |||| |||||| Sbjct 286 CGAAGCAATTTGAGAAGGAAGATGGAGAACAA 255 >seq350 Length=55662 Score = 132 bits (146), Expect = 2e-25 Identities = 248/363 (68%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 || ||||||||||| ||| | |||||||| | ||||||||||||||||||||| || || Sbjct 37526 GACAACCAACCAGGAGTATCCATTCAAGTCTATGAAGGAGAACGTGCAATGACTCGTGAC 37585 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 || || || || ||| ||||| || || || ||| | ||| ||| Sbjct 37586 AACCATCGTCTTGGTACATTCGAACTTTCCGGAATCCCGCCAGCTCCACGTGGAGTTCCC 37645 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||||||| | || | ||| | ||||||||||| ||||| |||||| || | || Sbjct 37646 CAAATTGAAGTCACTTTCGATATCGATGCAAATGGAATTCTAAATGTGTCAGCTGAGGAT 37705 Query 452378 AAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAA 452437 ||||| |||||||||| | || || || | || || ||| ||||| || || Sbjct 37706 AAATCCACTGGAAAATCGAACCGTATCACGATCAAAAACGAAAAAGGACGTTTGTCGCAA 37765 Query 452438 GAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTC---AAGGATGATGATGAACAA 452494 | ||||| || | |||||| | || || || | ||| ||||| |||| |||||| Sbjct 37766 GCTGATATCGATAGAATGGTCAACGAGGCGAAAGAGTTCGAAAAGGAAGATGCTGAACA- 37824 Query 452495 GTTAGAAAACATGTTGAAGCTAAAAACAAACTAGAAGGATATTGTTATCAAATGAAACAA 452554 ||| | | ||||| ||| ||| |||| || | |||| | ||| |||||||| Sbjct 37825 --GAGAGATCGTGTTGCTGCTCGAAATCAACTGGAGGCATATGCATTCCAAGTGAAACAA 37882 Query 452555 ACT 452557 || Sbjct 37883 GCT 37885 >seq1197 Length=26491 Score = 113 bits (124), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| ||||| || ||||| || ||||| ||| | || || || | || Sbjct 22880 AATGCAGATTTTCGTGAAAACTCTCACTGGAAAGACTATCACTTTGGAAGTCGAGGCTTC 22821 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | ||| ||| | | || || ||||| || |||||||||||||| || || || Sbjct 22820 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATTCCACCAGACCA 22761 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||| | | || ||| | || || || || || |||||||||||| | | || || || Sbjct 22760 ACAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTCTCCGACTACAA 22701 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 22700 TATCCAGAAGGAATCCACTCTCCACTTGGT 22671 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || || || || || || ||| | || Sbjct 23382 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCC 23323 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | || || || ||||| ||||||||||| || || |||||| Sbjct 23322 GATACCATTGAAAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAA 23263 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || |||||||| || |||||||||||| | | || || ||| Sbjct 23262 CAGAGACTTATCTTCGCCGGAAAACAACTCGAGGATGGAAGAACTCTCTCCGACTACAAT 23203 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 23202 ATCCAGAAGGAATCCACTCTTCACTTGGT 23174 Score = 93.3 bits (102), Expect = 2e-13 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || || || || || || |||||||| |||||| | || Sbjct 22364 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTTGAGGTTGAAGCCTC 22305 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | || || || ||||| |||||||||||||| || ||||| Sbjct 22304 TGACACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGATCA 22245 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | || ||| | || || || || || |||||| | || | | || || || Sbjct 22244 GCAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGACGTACCCTCTCCGACTACAA 22185 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || | ||||| | || |||||||| || | | || |||||| ||| || Sbjct 22184 CATCCAAAAGGAGTCCACCCTTCACTTGGTTCTCCGCCTCAGAGGAGGAATGCA 22131 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || || || || |||||| | ||| Sbjct 21854 ATGCAGATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAGGTTGAAGCCTCT 21795 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || ||||| ||||| ||||||||||| || || ||||| Sbjct 21794 GATACCATCGAGAACGTCAAGGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAG 21735 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||||| || ||| | || || || || || || ||| | || ||| | || || || Sbjct 21734 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGACGCACCTTGTCCGACTACAAC 21675 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 21674 ATCCAAAAGGAGTCGACCCTTCA 21652 Score = 86.0 bits (94), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| || || || || || || || ||| | || Sbjct 23611 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTC 23552 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| || | || || || ||||| ||||||||||| || || ||||| Sbjct 23551 CGATACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCACCAGATCA 23492 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || ||| | || || || ||||| |||||| | || ||| | ||||| || Sbjct 23491 GCAAAGACTCATCTTCGCCGGAAAGCAGCTTGAGGATGGACGCACCTTGTCTGATTACAA 23432 Query 391229 TATTGATAAGGA 391240 || | ||||| Sbjct 23431 CATCCAGAAGGA 23420 Score = 84.2 bits (92), Expect = 9e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||| ||||| ||||||| ||||| || || || || || || | Sbjct 24346 ATCATGCAAATCTTCGTCAAAACGTTGACTGGAAAAACGATCACCCTGGAGGTGGAGGCT 24287 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 ||||| | ||| || | || ||||| ||||| ||||| ||||| || || || Sbjct 24286 TCTGACACCATCGAGAACGTCAAGGCCAAAATCCAAGACAAGGAGGGAATCCCACCAGAC 24227 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 || ||| | | || ||| | || || || || || |||||||||||| | |||| || Sbjct 24226 CAGCAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGAACTCTTTCGGACTAC 24167 Query 391227 AATATTGATAAGGA 391240 || || | ||||| Sbjct 24166 AACATCCAGAAGGA 24153 >seq1737 Length=20200 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| ||||| || ||||| || || || || | || Sbjct 10008 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACGATTACCCTCGAGGTCGAGGCTTCC 9949 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || || || || || |||||||||||||| || ||||| Sbjct 9948 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 9889 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| | || || |||||||| |||||| | ||| | | || || || Sbjct 9888 CAACGCTTGATCTTCGCCGGAAAGCAACTTGAGGATGGACGTACTCTCTCCGACTACAAC 9829 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 9828 ATCCAGAAGGAGTCCACCCTTCACTTGGT 9800 >seq237 Length=67618 Score = 95.1 bits (104), Expect = 5e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 63853 TCACTCCACCAATTATTTAAATTACCATCCGCATCAAATCTTTTTCCTTGATCATCAAAC 63912 |||||||||||||| | || || |||||| |||| | | ||||||||||||||| Sbjct 15050 TCACTCCACCAATTGTGCAAGTTTCCATCCTTATCATACTGTGATCCTTGATCATCAAAT 15109 Query 63913 CCATGAGTGATTTCATGAGCTATAACTACTCCAATTCCTCCATAATT 63959 |||||||| ||||||||| | |||||| ||||||| |||| || || Sbjct 15110 CCATGAGTAATTTCATGACCGATAACTGCTCCAATGGCTCCGTAGTT 15156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975332084694188