Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq8705 176 3e-38 seq350 138 9e-27 seq14010 96.9 3e-14 seq330 96.9 3e-14 seq1879 91.5 1e-12 seq362 89.7 4e-12 >seq8705 Length=1774 Score = 176 bits (194), Expect = 3e-38 Identities = 298/430 (69%), Gaps = 4/430 (1%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 ||||| ||||| | || | |||||| ||||| || || ||||| | || || |||||| Sbjct 367 GTTGACTTATCCTCAGCTGACACATTCAGAATTCCGTTTGCATCGATGTCGAAAGTGACT 426 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 ||||| ||||| || || | ||||||||||||| || ||| | |||||||| ||| Sbjct 427 TCAATCTGAGGAACTCCACGTGGAGCAGGTGGGATTCCGCTCAATTCGAATGTTCCGAGA 486 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 || ||||| ||| | ||||| || ||| | | ||| || | |||| | | | Sbjct 487 CGATGGTTATCACGAGTCATGGCACGTTCTCCTTCGTAGACTTGAATTGAAACTCCTGGT 546 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 ||||| || | ||| ||||| ||| | | ||| || |||||| ||||||| | Sbjct 547 TGATTGTCGGCATATGTTGTGAATGTTTTCGATGCCTTTGTTGGAATTCGAGTGTTTCGA 606 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 ||||| | ||||||||| | |||||| ||||| || | |||||| | |||| ||| Sbjct 607 TCAATCAGATTGGTCATCACACCACCAGCTGTCTCGATTCCAAGACTCAATGGAGCAACA 666 Query 517544 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTT 517601 ||||| || | || || || | | ||| ||| |||| || || | ||||||| Sbjct 667 TCAACGAGTAGAACATCTTTGATTGTTTGATC--CTTGACTCCGGACAGTACGGCTGCTT 724 Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 517661 ||| ||||| || ||||||| |||||||| ||||| | | || |||| || | Sbjct 725 GAACTGCAGCTCCGAATGCAACTGCTTCATCGGGATTGATTGAGCAGTTGAGTTCCTTTC 784 Query 517662 CATTGAAAAA 517671 | |||||||| Sbjct 785 CGTTGAAAAA 794 Score = 141 bits (156), Expect = 7e-28 Identities = 304/447 (68%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| |||||| |||||||||||||| || |||| | | || | |||||| Sbjct 1290 CCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATGATTCGAATGGCGTTCAATCCAGCA 1349 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | |||||||||| || |||||||| || ||||| || |||||||| |||||| Sbjct 1350 ATCGTGGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCGTTGAAGTATGCAGGTACAGTA 1409 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 || || ||||| | ||| | | || | || | ||| |||| ||||| || || Sbjct 1410 ATGACTGCATCCTTGACTGCATGTCCCAGGTATGTCTCTGCAGTTTCCTTCATCTT-CTG 1468 Query 518357 AA-AATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTC-ATTTTGATATGATA 518414 || | ||||| ||| |||| ||| || ||||| | ||| ||| || | | | Sbjct 1469 AAGTACCATTGCTGAGATTTCTTCCGGATTGAATTGCCTCTTTTCTCCTTTCATCTCA-A 1527 Query 518415 CTTCAAAATATGG--TTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATC 518472 |||||| ||| || || | || | ||| ||||||||| | ||| || Sbjct 1528 CTTCAATCACTGGCTTTCCTTGTTTTCCTT--TCACTCCAAATGGCCAATGTTTGCAGTC 1585 Query 518473 TGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGT 518532 ||||||||| || |||| || ||| || || | || || ||||| || | || Sbjct 1586 TGATTGAACTGTTGCTTCATCGAACCGTCTGCCGATCAGTCTCTTCGCATCGAATACTGT 1645 Query 518533 ATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTC 518592 ||| |||||| || ||||||| ||| ||||||||||| | || ||||||| || Sbjct 1646 ATTCTCTGGATTTCGAGCTGCTTGATCTTTTGCTGCATCTCCGACCAATCGTTCTGTATC 1705 Query 518593 TGTAAATGAAACATATGATGGAGTTGT 518619 || || | |||||||| || ||||| Sbjct 1706 AGTGAAGGCGACATATGAAGGCGTTGT 1732 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 322241 AAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCC 322300 || || || |||||||| ||||||||||||||||| || ||| || | | || || Sbjct 1287 AATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATGATTCGAATGGCGTTCAATCCA 1346 Query 322301 GCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACA 322360 ||||| | || | ||| |||||||||||||| ||| || || ||||| |||||| Sbjct 1347 GCAATCGTGGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCGTTGAAGTATGCAGGTACA 1406 Query 322361 GTAATAACTGC 322371 ||||| ||||| Sbjct 1407 GTAATGACTGC 1417 >seq350 Length=55662 Score = 138 bits (152), Expect = 9e-27 Identities = 778/1237 (63%), Gaps = 83/1237 (7%) Strand=Plus/Minus Query 517141 ATCTGCTTCTTCAAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAA 517200 |||| | | ||| || ||||| || || | | |||||| || || | | ||| || || Sbjct 37816 ATCTTCCTTTTCGAACTCTTTCGCCTCGTTGACCATTCTATCGATATCAGCTTGCGACAA 37757 Query 517201 TCTTCCGCGATTATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGC 517260 | ||| | || | || || ||| || ||||| || |||||||| | || Sbjct 37756 ACGTCCTTTTTCGTTTTTGATCGTGATACGGTTCGATTTTCCAGTGGATTTATCCTCAGC 37697 Query 517261 AGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCC 517320 | |||||| ||||| ||||| ||||| | ||| || |||||||||||||| || || || Sbjct 37696 TGACACATTTAGAATTCCATTTGCATCGATATCGAAAGTGACTTCAATTTGGGGAACTCC 37637 Query 517321 TCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 | |||| || ||||| || | | ||||| || ||| || || || ||| Sbjct 37636 ACGTGGAGCTGGCGGGATTCCGGAAAGTTCGAATGTACCAAGACGATGGTTGTCACGAGT 37577 Query 517381 GAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGT 517440 | | ||||| || || | | ||| || | ||| | | ||| || || ||||| || Sbjct 37576 CATTGCACGTTCTCCTTCATAGACTTGAATGGATACTCCTGGTTGGTTGTCGGAATACGT 37517 Query 517441 TGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCAT 517500 || || | |||| || ||||| || ||||| | ||| || || || ||||| Sbjct 37516 GGTGAAAGTTTTGGAGGCCTTCGTTGGAATCGTGGTGTTACGATCGATGATGTTTGTCAT 37457 Query 517501 AATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT- 517559 | ||| || |||||||| | || ||| | |||| || ||||| || | | || Sbjct 37456 GACACCTCCAGCTGTTTCGATTCCGAGACTCAATGGAGCCACGTCAACGAGCAAGACATC 37397 Query 517560 TTTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTTGAATAGCAGCACCATA 517617 ||||| | | | ||| |||| || ||| | || ||||| | || |||||| | Sbjct 37396 TTTGATGGTCTG-ATCC--TTGATTCCGGAAAGGACGGCAGCTTGGACCGCTGCACCAAA 37340 Query 517618 TGCAACAGCTTCATCAGGATTAAC----------AGTTTC----------ATTTAGTTT- 517656 ||||| |||||||| ||||| | |||| | ||| |||| Sbjct 37339 GGCAACGGCTTCATCTGGATTGATCGAGCAATTGAGTTCCTGAAAATTAGATTCAGTTAA 37280 Query 517657 -TTTACCATTG-------AAAAAATTTGAA----------------AGAAGT-------- 517684 |||| |||| | | | |||||| |||||| Sbjct 37279 ATTTA--ATTGGTTGTGGAGAGAGTTTGAACTTACCTTTCCATTGAAGAAGTCCTTCAAG 37222 Query 517685 --TGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 | ||| | ||| |||| ||||| ||||||||||| || || | ||||| | || | Sbjct 37221 AGTTTCTGGATCTTTGGAACACGAGTAGATCCTCCAACCAAGACGACTTCATCAATCTTT 37162 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || || |||| ||| | ||| | | | || ||||| ||||||||| | || || Sbjct 37161 GACTTGTCCAATTTCGCATCTCGGAGAGCCTTCTCAACAGGTTCAAGAGTCTTTCGGAAT 37102 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA-ATCAATTCC 517860 | || | ||| ||||| || || ||| | ||| | || | | | ||| ||||| Sbjct 37101 AGATCGGCACAGAGTTCCTCAAAGCGAGCACGAGTGATTCTGG-AGCAGAGATCGATTCC 37043 Query 517861 TTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGC 517920 |||||| | |||||||| |||| || | || || || || || | | || || Sbjct 37042 TTCGAAGAGGGAATCAACCTCAACGGTGGCTTCAGAAGAGCTTGAAAGAGTTCTCTTGGC 36983 Query 517921 ACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTT 517980 ||||||||| || || | || | || | ||| | |||| |||| | ||| Sbjct 36982 ACGTTCACAAGCAGTTCGAAGACGTCTGATGGCACGGG--GATTCGGAGAAATATCCTTT 36925 Query 517981 ATATTTT--CTCTTGAAATCT-TCAACACACCATGTTACAAGA--CGATTATCAAAATCT 518035 | | | | |||||| || ||| | |||| | | || | ||||||||| Sbjct 36924 CCAGTCTTCCGCTTGAACTCGGTCATGAAG---TGTTGAAGCATTCGTTGGTCAAAATCT 36868 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATCTTCA 518092 || || || | | ||| | ||| | || | | |||| ||| | ||| || || Sbjct 36867 TCTCCACCAAGATGAGTGTCTCCAGCAGTGGACTTCACTTCGAAGATGGATCCTTCGGCA 36808 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | | | | | ||||| || || || || | ||| ||||| | || ||| | Sbjct 36807 ATGGTAAGGATGGAGACATCGAATGTACCTCCTCCAAGATCGAAAATCAAAACGTTCTTC 36748 Query 518153 TCTTTGTCTTGGTT--TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 || | | | || ||| || || ||||| || ||||||||||||||||| ||||| | Sbjct 36747 TCATC--CGAGATTCCTTTGTCCAGTCCATAAGCCAAAGCAGCAGCAGTTGGCTCATTGA 36690 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 | ||||| | |||| || |||||||| | ||||||| || ||||||||||| || Sbjct 36689 TGATTCTGATGGCATTGAGTCCAGCAATGGTGGCTGCATCCTTTGTGGCTTGTCTCTGAC 36630 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 |||||| ||||| ||||| |||||||| || || || Sbjct 36629 TATCGTTGAAATAGGCAGGTACAGTAATCACAGCGTC 36593 >seq14010 Length=264 Score = 96.9 bits (106), Expect = 3e-14 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 ||| |||| ||||| |||||||| || ||||||| ||||| | || ||||| || || Sbjct 255 CTTGGGAACACGAGTGGATCCTCCGACCAATACAACTTCATCAATCTTGGATTTGTCGAG 196 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACA 517812 ||| | ||| | | | |||||||| ||||||||| | || || | || | ||| Sbjct 195 TTTCGCATCTCGAAGAGCCTTTTCAACTGGTTCAAGAGTCTTTCGGAAGAGATCAGCACA 136 Query 517813 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGA 517872 |||||||||||| ||| | ||| | | | |||| ||||||||||| | ||| Sbjct 135 CAGTTCTTCGAATCGAGCACGAGTTATCTTTGAACACAAATCGATTCCTTCGAAAAGAGA 76 Query 517873 ATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGC 517932 ||| ||||| | || | || | ||| || |||| | || || |||||||| || Sbjct 75 ATCGACTTCGACGGTGGCTTCCGATGAACTTGAAAGTGTTCTCTTGGCTCGTTCACAGGC 16 Query 517933 TGT 517935 || Sbjct 15 GGT 13 >seq330 Length=57129 Score = 96.9 bits (106), Expect = 3e-14 Identities = 244/371 (66%), Gaps = 9/371 (2%) Strand=Plus/Plus Query 635406 ATGCTCACAAGGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAG 635465 |||| || | ||||||||||| | | |||| || || || | || ||||||| Sbjct 1488 ATGCAAACGATGCAGGAACCAAGAACTCCCAACAATGCACACTCATCCTTACCGAGGGAG 1547 Query 635466 ATTCAGCTAAAACATTCGCTATGTCTGGTCTTAATGTTATTGGAAGAGATTATTATGGAG 635525 |||| || || || || || | || ||||| |||| |||| | || | ||||| | Sbjct 1548 ATTCTGCCAAGACTTTGGCCGTTTCCGGTCTATCTGTTGTTGGTCGTGACAAGTATGGTG 1607 Query 635526 TTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaaaaaTTGCTG 635585 | ||||||||| | ||||| |||||||||||| | || | | || || |||||| Sbjct 1608 TCTTCCCACTTCGTGGAAAGCTTTTGAATGTTCGTGACGGAAACATGAAGCAAGTTGCTG 1667 Query 635586 ATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGA--ACAAGGAAAAGT--- 635640 | |||| || || | || || | || || | |||||| | |||| | |||| Sbjct 1668 AAAATGCTGAGATCAACGCTATGATCAAGATCCTCGGACTTCAATACAAAAAGAAGTACG 1727 Query 635641 ----TTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAAG 635696 |||||||| |||| | | || || || | || ||| | | |||||||| | Sbjct 1728 AAACAGATGATGATTTCAAGACTCTCCGTTACGGAAAGATGATGGTCATGGCTGATCAGG 1787 Query 635697 ATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGTTTTTGGCCAT 635756 || ||||| | ||| ||||| ||| | | || ||||| |||| || ||||| | Sbjct 1788 ATCAAGATGGTTCCCACATCAAGGGACTTGTTATCAATTTCGTCCACCACTTCTGGCCGT 1847 Query 635757 CTCTCGTTAAA 635767 | ||| || || Sbjct 1848 CGCTCATTCAA 1858 >seq1879 Length=19138 Score = 91.5 bits (100), Expect = 1e-12 Identities = 241/366 (66%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || || || ||||| ||||| | | || | ||| | |||| | || | ||| Sbjct 18895 CGGTTGTCGAAGTCTTCTCCTCCAAGATGGGTGTCTCCGGCAGTAGACTTGACCTCGAAG 18836 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||| || |||| | | || | ||||| ||| ||||| || | ||| || || Sbjct 18835 ATTCCGTCCTCAATGGTAAGAATGGACACATCGAAGGTACCACCTCCAAGATCGAAGATG 18776 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || || || |||| || | || || |||||||| || || | ||| ||||||||| Sbjct 18775 AGAACGTTGCGTTCTCCGTGTCCCTTCTTGTCAAGACCGTAGGCGATAGCGGCAGCAGTT 18716 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | | || || | |||| || ||| ||||| || ||||| Sbjct 18715 GGCTCGTTGATGATACGAAGGACGTTGACTCCAGAGATAGCTCCGGCATCCTTGGTGGCC 18656 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC--TTCTT 518318 || | ||| || ||||| || || || || ||||| || |||||||| | || | ||| Sbjct 18655 TGACGTTGCGAGTCGTTGAAGTAAGCTGGGACAGTGATGACGGCATCCTTGACGGTGCTT 18596 Query 518319 TACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 || | |||| || || | ||||| || |||| ||| || || |||| || Sbjct 18595 --CCGAGGAAAGCCTCAGCGGTCTCCTTCATCTTCAGCAAAACCATCGACGAGATTTCTT 18538 Query 518379 CTGGGG 518384 |||||| Sbjct 18537 CTGGGG 18532 >seq362 Length=55147 Score = 89.7 bits (98), Expect = 4e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 367009 GCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTATGGAGCTCCC 367068 || ||||| ||||| ||| ||||||| ||||| | ||| ||||||||||| ||| Sbjct 13128 GCCTTTGGAATGGGAATTGATAAACCAGATGTGCGGAATGTCATTCATTATGGTTGTCCG 13187 Query 367069 AAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATGGAG 367120 || ||||||||| ||| ||||||||||| || ||||| || | ||||||| Sbjct 13188 AAAAATATTGAATCTTACTATCAAGAAATGGGAAGAGCCGGCAGAGATGGAG 13239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780065098910266