Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20sinica_20[WormBase_20PRJNA194557-WS256_202016-12- 10] 15,261 sequences; 131,797,386 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1879 233 2e-56 seq350 203 4e-47 seq8705 170 2e-37 seq343 147 3e-30 >seq1879 Length=19138 Score = 233 bits (258), Expect = 2e-56 Identities = 399/573 (70%), Gaps = 8/573 (1%) Strand=Plus/Minus Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 || || ||||| ||||| ||||| || ||| || ||||| || | || ||| | | Sbjct 19105 CAAAGCTCCTCGAAACGGGCACGAGTGATGTTGGTGTAGAAGTCGATTCCCTCGAAGAGA 19046 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || || || || | | || | | || || | |||| |||||||||||| || Sbjct 19045 GAGTCGATCTCGATCGAAGCCTGGGAAGAGGACGAAAGAGTTCTCTTTGCGCGCTCGCAA 18986 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | ||||||||| ||||| |||||| || || ||| ||||| || || || Sbjct 18985 GCAGTGCGAAGACGACGAAGAGCACGTGGGTTAGAGGCAAGATCCTTCTTGTGCTTGCGC 18926 Query 7421 TTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || ||||| || ||||| || || | | | | ||||| ||||| || || | Sbjct 18925 TTGAACTCAGCAACGAAGTGGTTGACCATGCGGTT---GTCGAAGTCTTCTCCTCCAAGA 18869 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || || | ||||| || ||||| || | |||||| | | | || Sbjct 18868 TGGGTGTCTCCGGCAGTAGACTTGACCTCGAAGATTCCGTCCTCAATGGTAAGAATGGAC 18809 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTT 7596 ||||| || |||||||| || || || || ||||| ||||| ||| || ||| | || Sbjct 18808 ACATCGAAGGTACCACCTCCAAGATCGAAGATGAGAACGTTGCGT-TCTCCGTGTCCCTT 18750 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || |||||||| |||||||| || || ||||| || || || |||||||| ||| Sbjct 18749 CTTGTCAAGACCGTAGGCGATAGCGGCAGCAGTTGGCTCGTTGATGATACGAAGGACGTT 18690 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 | |||| |||| | | ||||| || || || || |||||||| ||||| ||||| || Sbjct 18689 GACTCCAGAGATAGCTCCGGCATCCTTGGTGGCCTGACGTTGCGAGTCGTTGAAGTAAGC 18630 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 ||||| || | ||| || ||| |||| | | ||||| | | || ||| | || || Sbjct 18629 TGGGACAGTGATGACGGCATCCTTGACGGTGCTTCCGAGGAAAGCCTCAGCGGTCTCCTT 18570 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||| || | ||||||||| || || ||||| Sbjct 18569 CATCTTCAGCAAAACCATCGACGAGATTTCTTC 18537 >seq350 Length=55662 Score = 203 bits (224), Expect = 4e-47 Identities = 492/735 (67%), Gaps = 10/735 (1%) Strand=Plus/Minus Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || ||||| || ||||| |||| ||||| | || || || || | || | ||| Sbjct 37200 CGAGTAGATCCTCCAACCAAGACGACTTCATCAATCTTTGACTTGTCCAATTTCGCATCT 37141 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCA 7252 || || | || || |||||||| | | || ||||| | || ||| ||||||||| Sbjct 37140 CGGAGAGCCTTCTCAACAGGTTCAAGAGTCTTTCGGAATAGATCGGCACAGAGTTCCTCA 37081 Query 7253 AAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCA 7312 || || ||||| || || | ||| ||| | || ||| | | ||||||| ||| Sbjct 37080 AAGCGAGCACGAGTGATTCTGGAGCAGAGATCGATTCCTTCGAAGAGGGAATCAACCTCA 37021 Query 7313 ATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAA 7372 | ||| | || | | || | |||| ||| || || ||||| || ||||| | | Sbjct 37020 ACGGTGGCTTCAGAAGAGCTTGAAAGAGTTCTCTTGGCACGTTCACAAGCAGTTCGAAGA 36961 Query 7373 CGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTC 7431 || | | |||||| || || |||||||| || | || || || ||||| || Sbjct 36960 CGTCTGATGGCACGGGGATTCGGAGAAATATCCTTTCCAGTCTTCCGCTTGAACTCGGTC 36901 Query 7432 AGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGC 7491 | ||||||| |||| | || || |||||||| ||||| | || || || || || Sbjct 36900 A-TGAAGTGTTGAAGCATTCGTTGGTCAAAATCTTCTCCACCAAGATGAGTGTCTCCAGC 36842 Query 7492 GGTCGCTTTGACTTCAAAGATACCTCCTT---CAATGTTTAACAACGAAACATCAAACGT 7548 || | || ||||| ||||| ||||| ||||| | | | || ||||| || || Sbjct 36841 AGTGGACTTCACTTCGAAGATGGATCCTTCGGCAATGGTAAGGATGGAGACATCGAATGT 36782 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-CGTCTTTGTTCTTATCGAGAC 7607 ||| || || || || ||||| | |||||| | || | || || | || || || | Sbjct 36781 ACCTCCTCCAAGATCGAAAATCAAAACGTTCTTCTCATCCGAGATTCCT-TTGTCCAGTC 36723 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCA 7666 | || || | ||| || || ||||| ||||| || || | || | || || || |||||| Sbjct 36722 CATAAGCCAAAGCAGCAGCAGTTGGCTCATTGATGATTCTGATGGCA-TTGAGTCCAGCA 36664 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || || || ||||| || || ||||||| || |||||| || ||||| || || || Sbjct 36663 ATGGTGGCTGCATCCTTTGTGGCTTGTCTCTGACTATCGTTGAAATAGGCAGGTACAGTA 36604 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 | || ||||| |||| | |||||||||| ||||||| | || ||||| || Sbjct 36603 ATCACAGCGTCTTTGACAGAATGTCCGAGATACGTTTCCGCGGTTTCCTTCATCTTCTGG 36544 Query 7787 AGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACT 7846 |||||||||| || || ||||| | |||||| || | || || || | ||| || Sbjct 36543 AGAACCATCGCCGAGATTTCTTCGGGATTGAACTGTCTCTTCTCTCCTTTCACATCCACC 36484 Query 7847 TCAATCA-TGGGTTT 7860 || | || ||| ||| Sbjct 36483 TCCACCACTGGCTTT 36469 >seq8705 Length=1774 Score = 170 bits (188), Expect = 2e-37 Identities = 352/515 (68%), Gaps = 14/515 (3%) Strand=Plus/Plus Query 7355 TCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATC-TTTCTTATG 7413 ||||| || ||||| | ||| || | |||||| || || ||| || || |||| | Sbjct 1035 TCACAGGCGGTTCGAAGACGTCGGATGGCACGTGGATTCGGGGAGATGTCCTTTCCAGTC 1094 Query 7414 TTTACGTTTAAACTC-TTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCAC 7472 ||| | || || || |||| ||||||| |||| | || ||||||||| || || | Sbjct 1095 TTT-CTCTTGAATTCATTCAT-GAAGTGTTGAAGCATTCGTTGATCGAAATCCTCTCCTC 1152 Query 7473 CCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA---ATGTTTA 7529 | | || ||||| ||||| || | ||||||||| ||||| ||||||| ||| | | Sbjct 1153 CGAGATGAGTATCTCCCGCTGTTGATTTGACTTCGAAGATGGATCCTTCAGCAATGGTAA 1212 Query 7530 ACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGT 7589 | |||||||| || ||||| || || || || || || | ||| ||| | || || Sbjct 1213 GGATTGAAACATCGAAAGTACCTCCTCCGAGATCGAAGATCAATACATTCTTCTCTTCAC 1272 Query 7590 CTTTGTTC---TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 || || || || | || || || | ||| || || ||||||||||| || || | Sbjct 1273 ---TGATCCCTTTGTCCAATCCATAAGCAAGAGCAGCTGCAGTTGGTTCATTGATGATTC 1329 Query 7647 GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 ||| ||||| |||||||| || || |||||||| || ||||||| || |||| Sbjct 1330 GAATGGCGTTCAATCCAGCAATCGTGGCTGCATCTTTTGTTGCTTGTCTCTGACTGTCGT 1389 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766 | ||||| || || || || | ||| || ||| ||||| | || || || | || | Sbjct 1390 TGAAGTATGCAGGTACAGTAATGACTGCATCCTTGACTGCATGTCCCAGGTATGTCTCTG 1449 Query 7767 CGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 | | || ||||| || ||| ||||| | ||| || ||||| | || || || Sbjct 1450 CAGTTTCCTTCATCTTCTGAAGTACCATTGCTGAGATTTCTTCCGGATTGAATTGCCTCT 1509 Query 7827 TTTCACCGTTAAAATCAACTTCAATCA-TGGGTTT 7860 |||| || || | ||||||||||||| ||| ||| Sbjct 1510 TTTCTCCTTTCATCTCAACTTCAATCACTGGCTTT 1544 >seq343 Length=56457 Score = 147 bits (162), Expect = 3e-30 Identities = 259/375 (69%), Gaps = 3/375 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||| || ||||| || | || Sbjct 24583 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCTCCGTTGGTGGCGAGAACTTCGAAAACTCC 24524 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 || ||| | | | ||||| || || || ||||| |||| || |||| ||| | Sbjct 24523 GTTGTCGATGGTGAGGAGAGAAACGTCGAAAGTTCCACCTCCCAAATCGAAAACGAGAAT 24464 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| || || ||| ||||| || || || || ||||| || || || ||||| || Sbjct 24463 GTTGCGCTC-TC--CTTCCTTCTTGTCAAGTCCATAAGCGATGGCAGCAGCTGTTGGCTC 24407 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || |||| | || || || || |||||| | ||||| || || || |||| Sbjct 24406 GTTGATGATGCGAACAACATTGAGTCCTGCGATAGTTCCGGCATCCTTGGTGGCCTGTCT 24347 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| | ||||| || || || || || || ||||| |||| | |||| | ||||| Sbjct 24346 TTGGGCGTCGTTGAAATATGCTGGAACAGTGACGACGGCGTTTTTCACTTCGTGTCCGAG 24287 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || || || ||||| | ||||||||||| || ||||| | |||| ||||| | | Sbjct 24286 GTAAGACTCAGCGATTTGCTTCATTTTGGTGAGGACCATTGCCGAAACTTCTTCTGGAGT 24227 Query 7816 AAACTGTTTCGTTTC 7830 ||||| |||||||| Sbjct 24226 GAACTGCTTCGTTTC 24212 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 |||||| | ||||| || || || | ||||||| ||||| |||| |||||||| Sbjct 24061 TCCGATTAAGCGCTTGGCGTCGAAGATCGTGTTTTCAGGGTTGATGGTAAGCTGGTTCTT 24002 Query 7996 CGCCGCGTCCCCGATAAGACGTTCA--TTATTTTCC-GTAAACGCGACGTACGATGGGGT 8052 || || || ||||| | |||||| || | ||| | ||| || ||||| || ||||| Sbjct 24001 AGCGGCATCTCCGATCAAACGTTCTCCTTGCTCTCCAGAAAAGGCAACGTATGAAGGGGT 23942 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 ||| || ||||||||||| |||||||| || || || | || | | || ||||| Sbjct 23941 GATTCTGTTTCCTTGGTCGTTGGCAATAATCTCAACACGTCCATTCTTGAATACTCCGAC 23882 Query 8113 GCACGAATACGTTGTTCC 8130 || || || || ||||| Sbjct 23881 ACAGGAGTAAGTGGTTCC 23864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635011640479240